Variant report

Variant	rs5028145
Chromosome Location	chr2:209536545-209536546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10497909	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1517344	0.96[ASN][1000 genomes]
rs1607180	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs1607181	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16841614	0.87[ASN][1000 genomes]
rs17721541	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1914403	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005292	chr2:209470753-209631662	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2756959	chr2:209472551-209551952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759112	chr2:209472551-209551952	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv460056	chr2:209513915-209659222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv584303	chr2:209513915-209659222	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv875754	chr2:209523619-209622211	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209536000-209537000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:209536000-209537000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:209536000-209537000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:209536000-209537000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:209536000-209537200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:209536000-209537200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:209536000-209537200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:209536000-209538800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:209536200-209537000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:209536200-209537200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:209536200-209537200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:209536200-209537200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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