Variant report

Variant	rs5030256
Chromosome Location	chr11:32422192-32422193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:32421858-32422192	K562	blood:	n/a	n/a
2	POLR2A	chr11:32421481-32422951	K562	blood:	n/a	n/a
3	MAFK	chr11:32421867-32422287	K562	blood:	n/a	n/a
4	CEBPB	chr11:32421861-32422193	IMR90	lung:	n/a	n/a
5	JUN	chr11:32421510-32422355	K562	blood:	n/a	chr11:32421998-32422008 chr11:32421999-32422007 chr11:32421999-32422007 chr11:32421999-32422006
6	JUND	chr11:32421840-32422221	K562	blood:	n/a	chr11:32421998-32422008 chr11:32421999-32422007 chr11:32421999-32422007 chr11:32421999-32422006 chr11:32421997-32422008
7	CEBPB	chr11:32421868-32422219	HepG2	liver:	n/a	n/a
8	SPI1	chr11:32422169-32422744	HL-60	blood:	n/a	n/a
9	CEBPB	chr11:32421862-32422223	K562	blood:	n/a	n/a
10	ATF3	chr11:32421810-32422213	K562	blood:	n/a	n/a
11	ATF1	chr11:32421863-32422205	K562	blood:	n/a	n/a
12	CEBPB	chr11:32421872-32422407	A549	lung:	n/a	n/a
13	CEBPB	chr11:32421853-32422195	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr11:32421852-32422214	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
WT1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs5030245	1.00[AFR][1000 genomes]
rs5030288	1.00[AFR][1000 genomes]
rs5030307	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32414800-32424200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:32417600-32422200	Strong transcription	Ovary	ovary
3	chr11:32418200-32423600	Weak transcription	Spleen	Spleen
4	chr11:32420400-32429600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:32421200-32422200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:32421200-32422200	Enhancers	Placenta	Placenta
7	chr11:32421400-32422200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:32421400-32422400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:32421600-32422200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:32421600-32422200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:32421600-32422200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:32421600-32422200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:32421600-32422400	Enhancers	Fetal Heart	heart
14	chr11:32421600-32422400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr11:32421800-32422200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:32421800-32422200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:32421800-32422200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:32421800-32422400	Genic enhancers	K562	blood
19	chr11:32422000-32422200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
20	chr11:32422000-32422200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:32422000-32422200	Bivalent Enhancer	NHEK	skin
22	chr11:32422000-32422800	Strong transcription	Fetal Kidney	kidney
23	chr11:32422000-32423200	Weak transcription	Dnd41	blood

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