Variant report

Variant	rs5030273
Chromosome Location	chr11:32418477-32418478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs5030216	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap]
rs5030288	1.00[AMR][1000 genomes]
rs5030305	0.80[YRI][hapmap]
rs5030307	1.00[AMR][1000 genomes]
rs7106429	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32408600-32421600	Weak transcription	Left Ventricle	heart
2	chr11:32409400-32422000	Weak transcription	Fetal Kidney	kidney
3	chr11:32412600-32421800	Strong transcription	K562	blood
4	chr11:32414800-32424200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:32415200-32418600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:32416200-32418600	Enhancers	Fetal Heart	heart
7	chr11:32417200-32419000	Flanking Active TSS	Dnd41	blood
8	chr11:32417600-32422200	Strong transcription	Ovary	ovary
9	chr11:32418000-32418800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:32418200-32418800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:32418200-32423600	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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