Variant report

Variant	rs5030306
Chromosome Location	chr11:32411648-32411649
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10160483	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12277905	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12292557	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16923227	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16926048	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1799934	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2234589	0.95[EUR][1000 genomes]
rs28593224	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2900740	0.95[EUR][1000 genomes]
rs5030246	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs5030279	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73473709	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73475519	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32403200-32411800	Weak transcription	Spleen	Spleen
2	chr11:32404000-32411800	Weak transcription	Right Ventricle	heart
3	chr11:32406000-32412800	Genic enhancers	Dnd41	blood
4	chr11:32408400-32413000	Enhancers	Fetal Heart	heart
5	chr11:32408600-32413600	Weak transcription	NH-A	brain
6	chr11:32408600-32421600	Weak transcription	Left Ventricle	heart
7	chr11:32409400-32413400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:32409400-32422000	Weak transcription	Fetal Kidney	kidney
9	chr11:32409600-32413600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:32409600-32413800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:32410200-32413600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:32410600-32413600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:32410800-32412000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:32410800-32412600	Weak transcription	K562	blood
15	chr11:32411400-32412400	Strong transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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