Variant report

Variant	rs5030458
Chromosome Location	chr11:36518323-36518324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10501153	1.00[YRI][hapmap]
rs331448	1.00[YRI][hapmap]
rs331483	1.00[YRI][hapmap]
rs5030450	1.00[YRI][hapmap]
rs7929961	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36490000-36530400	Weak transcription	Esophagus	oesophagus
2	chr11:36500800-36522400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:36502200-36523400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:36504400-36524000	Weak transcription	Stomach Mucosa	stomach
5	chr11:36504800-36521200	Strong transcription	Fetal Intestine Large	intestine
6	chr11:36504800-36521600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:36504800-36521800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:36504800-36522800	Strong transcription	Liver	Liver
9	chr11:36504800-36523000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr11:36505200-36521600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:36505400-36520800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:36505400-36521600	Strong transcription	Duodenum Mucosa	Duodenum
13	chr11:36505400-36523200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:36505800-36520800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:36506000-36520400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:36506000-36520800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:36506600-36523200	Strong transcription	Placenta	Placenta
18	chr11:36507400-36524800	Weak transcription	Psoas Muscle	Psoas
19	chr11:36507600-36521800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:36508800-36530400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:36509200-36520400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:36509800-36521600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:36510000-36520200	Strong transcription	Left Ventricle	heart
24	chr11:36510000-36523200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:36510000-36525600	Strong transcription	Fetal Thymus	thymus
26	chr11:36510200-36520200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:36510200-36521600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:36510200-36523400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:36510400-36520400	Strong transcription	Primary hematopoietic stem cells	blood
30	chr11:36510400-36520600	Strong transcription	NH-A	brain
31	chr11:36510400-36521800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:36510400-36523000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr11:36510400-36523000	Strong transcription	Adipose Nuclei	Adipose
34	chr11:36510400-36523800	Strong transcription	Primary B cells from cord blood	blood
35	chr11:36510600-36520800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:36510600-36521400	Strong transcription	HUVEC	blood vessel
37	chr11:36510600-36524600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:36510600-36525400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr11:36510800-36520000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:36510800-36520200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:36510800-36523200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:36511000-36520200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:36511000-36521600	Strong transcription	Osteobl	bone
44	chr11:36511000-36526000	Strong transcription	Dnd41	blood
45	chr11:36511200-36519000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:36511800-36523400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:36512200-36521800	Weak transcription	Aorta	Aorta
48	chr11:36512200-36530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:36512400-36518400	Weak transcription	Fetal Kidney	kidney
50	chr11:36512400-36518600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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