Variant report

Variant	rs503155
Chromosome Location	chr11:86356456-86356457
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10792872	0.86[EUR][1000 genomes]
rs493010	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs538058	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs539805	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs591060	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs597823	0.86[ASN][1000 genomes]
rs609885	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs624183	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs648258	0.85[ASN][1000 genomes]
rs661954	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs668753	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs674053	0.87[EUR][1000 genomes]
rs679220	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs688119	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs693817	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555704	chr11:86344677-86386784	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86340000-86357200	Weak transcription	Fetal Brain Female	brain
2	chr11:86341600-86358800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:86344000-86373800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:86346600-86359600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86348800-86361600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:86352600-86360600	Weak transcription	A549	lung
7	chr11:86354000-86356600	Weak transcription	Aorta	Aorta
8	chr11:86354800-86356600	Enhancers	Osteobl	bone
9	chr11:86354800-86356800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:86355200-86357000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:86355600-86370400	Weak transcription	Psoas Muscle	Psoas
12	chr11:86355800-86356600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:86355800-86356800	Weak transcription	Adipose Nuclei	Adipose
14	chr11:86355800-86357000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:86355800-86357000	Enhancers	Pancreas	Pancrea
16	chr11:86356000-86356600	Enhancers	Stomach Smooth Muscle	stomach
17	chr11:86356200-86356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:86356200-86361800	Weak transcription	Left Ventricle	heart
19	chr11:86356400-86357000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:86356400-86357000	ZNF genes & repeats	Fetal Stomach	stomach

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