Variant report

Variant	rs504385
Chromosome Location	chr10:97233153-97233154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs498671	0.89[ASN][1000 genomes]
rs499441	0.89[ASN][1000 genomes]
rs512766	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs579342	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97223200-97234000	Weak transcription	Ovary	ovary
3	chr10:97224800-97237000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:97226200-97236000	Enhancers	HepG2	liver
5	chr10:97226400-97236800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
7	chr10:97226800-97234600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:97227400-97233200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:97227400-97233400	Weak transcription	Fetal Lung	lung
10	chr10:97227400-97240400	Weak transcription	Spleen	Spleen
11	chr10:97227600-97235800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97228600-97233800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:97228600-97236800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:97229000-97235800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:97229200-97233400	Enhancers	Left Ventricle	heart
16	chr10:97229600-97233800	Weak transcription	Small Intestine	intestine
17	chr10:97229800-97233600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:97229800-97233600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:97229800-97234000	Weak transcription	Brain Germinal Matrix	brain
20	chr10:97229800-97236600	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:97230200-97233400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:97230200-97233800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:97230200-97233800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:97230200-97233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:97230400-97233600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:97230400-97233600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:97230400-97233600	Weak transcription	Brain Angular Gyrus	brain
28	chr10:97230400-97233800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:97230400-97233800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:97230400-97233800	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:97230400-97233800	Weak transcription	Fetal Brain Female	brain
32	chr10:97230400-97234000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:97230400-97234000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:97230400-97234000	Weak transcription	Fetal Stomach	stomach
35	chr10:97230400-97234200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:97230400-97234200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:97230400-97234400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:97230400-97235000	Weak transcription	Esophagus	oesophagus
39	chr10:97230400-97235600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:97230400-97236000	Weak transcription	Pancreas	Pancrea
41	chr10:97230400-97236800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:97230600-97233400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:97230600-97233600	Weak transcription	Brain Anterior Caudate	brain
44	chr10:97230600-97239400	Weak transcription	Gastric	stomach
45	chr10:97231200-97233600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:97231200-97234000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:97231200-97234000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr10:97231200-97234000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:97231200-97234200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:97231400-97233200	Enhancers	Fetal Muscle Leg	muscle

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