Variant report

Variant	rs504822
Chromosome Location	chr9:15242896-15242897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15232176..15234020-chr9:15242735..15245589,2	MCF-7	breast:
2	chr9:15240990..15244433-chr9:15303373..15307437,3	MCF-7	breast:
3	chr9:15242669..15244431-chr9:15422825..15424488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155158	Chromatin interaction
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10961916	0.83[GIH][hapmap]
rs1215128	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs473384	0.84[JPT][hapmap]
rs533324	0.89[CHB][hapmap];0.83[GIH][hapmap]
rs552768	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs560767	0.89[CHB][hapmap];0.88[GIH][hapmap]
rs591648	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv521191	chr9:15218947-15246652	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
2	chr9:15223400-15258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:15224600-15243600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:15224600-15244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:15229800-15243000	Weak transcription	Gastric	stomach
6	chr9:15229800-15243000	Weak transcription	Ovary	ovary
7	chr9:15232000-15244400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:15232600-15246400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:15233600-15243400	Weak transcription	Fetal Stomach	stomach
10	chr9:15238400-15275400	Weak transcription	Fetal Intestine Large	intestine
11	chr9:15238800-15243600	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:15239000-15244200	Weak transcription	Esophagus	oesophagus
13	chr9:15239000-15247000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:15239400-15243600	Weak transcription	Pancreas	Pancrea
15	chr9:15240200-15246800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:15240200-15248800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:15240200-15250800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr9:15240400-15243000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr9:15240400-15248800	Weak transcription	HepG2	liver
20	chr9:15240400-15249400	Weak transcription	Spleen	Spleen
21	chr9:15240400-15265600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:15240600-15275400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:15241000-15243000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:15241200-15243400	Weak transcription	Primary T cells from cord blood	blood
25	chr9:15241200-15244000	Weak transcription	Stomach Mucosa	stomach
26	chr9:15241200-15244200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:15241200-15244200	Weak transcription	Small Intestine	intestine
28	chr9:15241200-15246600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:15241200-15273400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr9:15241200-15286200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:15242200-15243200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:15242200-15243400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:15242200-15244200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr9:15242400-15243200	Enhancers	Left Ventricle	heart
35	chr9:15242400-15244400	Strong transcription	Fetal Intestine Small	intestine
36	chr9:15242400-15244800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:15242400-15247200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:15242600-15243400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:15242600-15243600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr9:15242600-15250200	Enhancers	Osteobl	bone
41	chr9:15242800-15243200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:15242800-15243400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:15242800-15244200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:15242800-15244600	Enhancers	Lung	lung
45	chr9:15242800-15244800	Enhancers	Aorta	Aorta
46	chr9:15242800-15245200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:15242800-15245200	Enhancers	NHDF-Ad	bronchial
48	chr9:15242800-15248800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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