Variant report

Variant	rs507211
Chromosome Location	chr11:86376739-86376740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86368500..86371397-chr11:86375081..86378008,3	MCF-7	breast:
2	chr11:86375294..86378539-chr11:86378821..86381383,4	MCF-7	breast:
3	chr11:86374935..86377695-chr11:86510735..86513709,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1938936	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2508304	0.86[CHB][hapmap]
rs2512985	0.83[CHB][hapmap]
rs2512987	0.82[CHB][hapmap]
rs2512988	0.86[CHB][hapmap]
rs493010	0.80[AMR][1000 genomes]
rs507123	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs538058	0.83[AMR][1000 genomes]
rs539805	0.83[AMR][1000 genomes]
rs547591	0.95[ASN][1000 genomes]
rs591060	0.80[AMR][1000 genomes]
rs594361	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs601988	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs603241	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs609885	0.83[AMR][1000 genomes]
rs622933	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs624183	0.83[AMR][1000 genomes]
rs626049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs627684	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs642245	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs661954	0.80[AMR][1000 genomes]
rs668753	0.83[AMR][1000 genomes]
rs670736	0.81[CHB][hapmap]
rs679220	0.80[AMR][1000 genomes]
rs682915	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs684365	0.95[ASN][1000 genomes]
rs688119	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555704	chr11:86344677-86386784	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86362000-86378000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:86366200-86380000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:86366600-86379800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:86369800-86379600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:86369800-86379600	Weak transcription	Lung	lung
6	chr11:86369800-86379800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:86369800-86381200	Weak transcription	Pancreas	Pancrea
8	chr11:86369800-86382000	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:86370000-86382000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:86370400-86379600	Weak transcription	Fetal Brain Female	brain
11	chr11:86370600-86379400	Weak transcription	Fetal Brain Male	brain
12	chr11:86371200-86380800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:86371400-86378600	Weak transcription	Osteobl	bone
14	chr11:86371400-86379600	Weak transcription	Right Atrium	heart
15	chr11:86371400-86381000	Weak transcription	HUVEC	blood vessel
16	chr11:86371400-86381000	Weak transcription	NHLF	lung
17	chr11:86371400-86381200	Weak transcription	Stomach Mucosa	stomach
18	chr11:86371400-86381400	Weak transcription	HSMM	muscle
19	chr11:86371600-86380800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:86371800-86378600	Weak transcription	Fetal Lung	lung
21	chr11:86372400-86381200	Weak transcription	NHDF-Ad	bronchial
22	chr11:86372800-86377000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:86372800-86379600	Weak transcription	Brain Angular Gyrus	brain
24	chr11:86373000-86381200	Weak transcription	Primary T cells from cord blood	blood
25	chr11:86373000-86381200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:86373600-86382000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:86373800-86376800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:86374600-86377600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:86374600-86380200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:86374600-86380200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:86374600-86381200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:86374600-86381200	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:86374800-86381000	Weak transcription	Adipose Nuclei	Adipose
34	chr11:86374800-86381200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:86375400-86376800	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:86375400-86376800	Genic enhancers	A549	lung
37	chr11:86375600-86376800	Genic enhancers	Left Ventricle	heart
38	chr11:86375800-86376800	Genic enhancers	Right Ventricle	heart
39	chr11:86375800-86379600	Weak transcription	Brain Germinal Matrix	brain
40	chr11:86375800-86380200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:86375800-86380200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:86375800-86382000	Weak transcription	Fetal Intestine Small	intestine
43	chr11:86376000-86378000	Weak transcription	Psoas Muscle	Psoas
44	chr11:86376000-86378400	Enhancers	Fetal Heart	heart
45	chr11:86376000-86380000	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:86376000-86381400	Weak transcription	Small Intestine	intestine
47	chr11:86376000-86382000	Weak transcription	Fetal Intestine Large	intestine
48	chr11:86376200-86377400	Weak transcription	Aorta	Aorta
49	chr11:86376200-86377800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:86376200-86377800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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