Variant report
| Variant | rs513343 |
|---|---|
| Chromosome Location | chr6:49683787-49683788 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CRISP2 | TF binding region |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1621948 | 1.00[JPT][hapmap] |
| rs184857 | 1.00[JPT][hapmap] |
| rs360541 | 1.00[JPT][hapmap] |
| rs360543 | 1.00[JPT][hapmap] |
| rs483914 | 1.00[JPT][hapmap] |
| rs512299 | 1.00[JPT][hapmap] |
| rs571257 | 1.00[JPT][hapmap] |
| rs584490 | 1.00[JPT][hapmap] |
| rs597544 | 1.00[JPT][hapmap] |
| rs699959 | 1.00[JPT][hapmap] |
| rs699960 | 1.00[JPT][hapmap] |
| rs699962 | 1.00[JPT][hapmap] |
| rs699974 | 1.00[JPT][hapmap] |
| rs699977 | 1.00[JPT][hapmap] |
| rs699991 | 1.00[JPT][hapmap] |
| rs7760595 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49681800-49694200 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
