Variant report

Variant	rs515184
Chromosome Location	chr11:65960411-65960412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65958383..65961090-chr11:65973848..65975622,2	MCF-7	breast:
2	chr11:65954321..65956732-chr11:65958143..65960901,2	MCF-7	breast:
3	chr11:65956435..65961151-chr11:65961394..65965581,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs503813	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs532509	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7396531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
2	chr11:65930000-65960800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:65938400-65978000	Weak transcription	Aorta	Aorta
4	chr11:65938600-65960800	Weak transcription	Dnd41	blood
5	chr11:65940000-65978000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:65940400-65978000	Weak transcription	Esophagus	oesophagus
7	chr11:65944400-65977800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:65944600-65963600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:65947800-65961000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:65949800-65977800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:65950200-65978400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:65951200-65960800	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:65951200-65960800	Weak transcription	Ovary	ovary
14	chr11:65951200-65962800	Weak transcription	Brain Substantia Nigra	brain
15	chr11:65951400-65960800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:65951400-65960800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:65951600-65960600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:65951600-65960800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:65951600-65961000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:65951800-65960600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:65952200-65961800	Weak transcription	Brain Anterior Caudate	brain
22	chr11:65952200-65967400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:65952400-65960600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:65952400-65967800	Weak transcription	Brain Germinal Matrix	brain
25	chr11:65953000-65966200	Strong transcription	Primary T cells from cord blood	blood
26	chr11:65954400-65961000	Weak transcription	Fetal Thymus	thymus
27	chr11:65955200-65960800	Weak transcription	Fetal Brain Female	brain
28	chr11:65956400-65967400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:65956800-65961000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:65957000-65960800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:65957000-65961800	Weak transcription	HUVEC	blood vessel
32	chr11:65957000-65978400	Weak transcription	Brain Angular Gyrus	brain
33	chr11:65957400-65961000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:65957400-65966000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr11:65957600-65960800	Weak transcription	Adipose Nuclei	Adipose
36	chr11:65957600-65962000	Weak transcription	NH-A	brain
37	chr11:65958200-65960600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:65958400-65967400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:65958400-65967600	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:65958600-65960600	Enhancers	Hela-S3	cervix
41	chr11:65958600-65961000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr11:65958600-65961000	Genic enhancers	Fetal Intestine Small	intestine
43	chr11:65958800-65961000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:65958800-65977800	Weak transcription	Lung	lung
45	chr11:65958800-65978600	Weak transcription	Pancreas	Pancrea
46	chr11:65958800-65983600	Weak transcription	Small Intestine	intestine
47	chr11:65958800-65989200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:65959000-65960600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:65959000-65965800	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:65959200-65967800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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