Variant report

Variant	rs515463
Chromosome Location	chr11:75052408-75052409
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75050760..75054714-chr11:75085548..75088941,3	MCF-7	breast:
2	chr11:75050186..75052679-chr11:75081484..75083245,2	MCF-7	breast:
3	chr11:75050045..75052977-chr11:75131615..75134854,3	MCF-7	breast:
4	chr11:75047858..75058236-chr11:75058819..75065197,25	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2510894	0.81[ASN][1000 genomes]
rs527106	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036292	chr11:74937977-75059496	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
2	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
3	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
4	nsv522447	chr11:74982939-75068767	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75039400-75060800	Enhancers	Placenta	Placenta
2	chr11:75043800-75054000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:75044200-75055400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:75044200-75055600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:75044200-75055800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:75044200-75056600	Enhancers	Esophagus	oesophagus
7	chr11:75044200-75056800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:75044200-75060400	Genic enhancers	Fetal Stomach	stomach
9	chr11:75044400-75055200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:75044400-75056400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:75044400-75057200	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:75046400-75061200	Enhancers	Fetal Thymus	thymus
13	chr11:75046800-75060200	Enhancers	Brain Anterior Caudate	brain
14	chr11:75046800-75061600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:75047000-75054400	Enhancers	Brain Substantia Nigra	brain
16	chr11:75047000-75059600	Enhancers	Pancreas	Pancrea
17	chr11:75047000-75061200	Enhancers	Left Ventricle	heart
18	chr11:75047000-75061200	Enhancers	Stomach Mucosa	stomach
19	chr11:75047200-75060400	Enhancers	Brain Angular Gyrus	brain
20	chr11:75047400-75055400	Enhancers	Fetal Intestine Large	intestine
21	chr11:75047600-75054400	Enhancers	Gastric	stomach
22	chr11:75047600-75056000	Enhancers	Fetal Muscle Leg	muscle
23	chr11:75047600-75060600	Enhancers	Right Atrium	heart
24	chr11:75047800-75053200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:75047800-75053200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:75047800-75053200	Enhancers	Fetal Heart	heart
27	chr11:75047800-75054400	Enhancers	Right Ventricle	heart
28	chr11:75047800-75060600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:75047800-75060800	Genic enhancers	Fetal Intestine Small	intestine
30	chr11:75048000-75053400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:75048000-75053400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr11:75048000-75055600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:75048000-75055800	Enhancers	Lung	lung
34	chr11:75048000-75058200	Enhancers	Primary B cells from cord blood	blood
35	chr11:75048000-75061600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:75048200-75052800	Enhancers	Spleen	Spleen
37	chr11:75048200-75054800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:75048400-75052800	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr11:75048400-75053200	Enhancers	HSMMtube	muscle
40	chr11:75048400-75054600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:75048400-75061000	Enhancers	Liver	Liver
42	chr11:75048600-75053200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:75048600-75058400	Enhancers	Small Intestine	intestine
44	chr11:75049000-75053600	Enhancers	Fetal Kidney	kidney
45	chr11:75049000-75054000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr11:75049000-75056000	Enhancers	Ovary	ovary
47	chr11:75049200-75055400	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr11:75049400-75054600	Enhancers	K562	blood
49	chr11:75049400-75055800	Enhancers	Fetal Brain Female	brain
50	chr11:75049600-75054200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links