Variant report

Variant	rs515568
Chromosome Location	chr6:113703164-113703165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113696986..113699351-chr6:113701475..113704316,2	MCF-7	breast:
2	chr6:113701651..113703892-chr6:113706663..113709047,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1168133	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs586040	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830778	chr6:113662011-113729804	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3413587	chr6:113700638-113703347	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3473195	chr6:113700879-113703213	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3473196	chr6:113700879-113703213	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113698600-113703200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:113698600-113703200	Weak transcription	HUVEC	blood vessel
3	chr6:113698800-113705800	Weak transcription	NH-A	brain
4	chr6:113699000-113704600	Weak transcription	Osteobl	bone
5	chr6:113699200-113706400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:113699400-113703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:113699600-113703400	Weak transcription	Fetal Stomach	stomach
8	chr6:113700800-113703200	Weak transcription	A549	lung
9	chr6:113701000-113703200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:113701800-113703600	Enhancers	NHDF-Ad	bronchial
11	chr6:113702200-113703400	Enhancers	GM12878-XiMat	blood
12	chr6:113702200-113703600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:113702200-113703800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:113702200-113704000	Enhancers	NHLF	lung
15	chr6:113702200-113705000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:113702400-113703600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:113702600-113703200	Enhancers	NHEK	skin
18	chr6:113702600-113703400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:113702600-113703600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:113702800-113703200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:113702800-113703800	Enhancers	Fetal Lung	lung
22	chr6:113703000-113703600	Enhancers	Fetal Brain Female	brain
23	chr6:113703000-113704000	Bivalent Enhancer	Primary B cells from cord blood	blood

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