Variant report

Variant	rs518330
Chromosome Location	chr3:146216345-146216346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:146215967..146218741-chr3:146227451..146229458,2	K562	blood:
2	chr3:146216120..146218147-chr3:146219212..146221539,2	K562	blood:
3	chr3:146216037..146218626-chr3:146223449..146226621,3	K562	blood:
4	chr3:146214293..146216886-chr3:146219168..146220915,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs473794	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs474803	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs488053	0.84[AMR][1000 genomes]
rs506974	0.81[AMR][1000 genomes]
rs524720	0.81[AMR][1000 genomes]
rs527708	0.81[AMR][1000 genomes]
rs536619	0.81[AMR][1000 genomes]
rs557809	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs568302	0.83[AMR][1000 genomes]
rs575834	0.81[AMR][1000 genomes]
rs968634	0.81[AMR][1000 genomes]
rs968635	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3448053	chr3:146186791-146262066	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3523751	chr3:146186838-146261806	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3523753	chr3:146186838-146261806	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2496437	chr3:146186902-146262961	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv3416587	chr3:146191303-146222138	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146211400-146221200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:146214200-146235400	Weak transcription	Right Atrium	heart
3	chr3:146214800-146220600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:146215000-146220400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:146215000-146220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:146215800-146216400	Active TSS	Primary T cells from cord blood	blood
7	chr3:146215800-146216400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
8	chr3:146215800-146216400	Flanking Active TSS	Dnd41	blood
9	chr3:146215800-146216400	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr3:146215800-146217600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:146216000-146216400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:146216000-146216400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr3:146216000-146216400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr3:146216000-146216400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:146216000-146216400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:146216000-146216400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr3:146216000-146216400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:146216000-146216400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:146216000-146216400	Enhancers	Fetal Thymus	thymus
20	chr3:146216000-146216600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr3:146216000-146221800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:146216000-146232800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:146216200-146216400	Active TSS	Primary T cells fromperipheralblood	blood
24	chr3:146216200-146216400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr3:146216200-146221600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:146216200-146224000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:146216200-146230000	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links