Variant report
Variant | rs518836 |
---|---|
Chromosome Location | chr6:149626219-149626220 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:149625453..149629470-chr6:149636058..149640474,5 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000055208 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs477088 | 0.94[EUR][1000 genomes] |
rs481651 | 0.92[EUR][1000 genomes] |
rs491576 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs494228 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs496091 | 0.80[EUR][1000 genomes] |
rs496124 | 0.80[EUR][1000 genomes] |
rs496157 | 0.80[EUR][1000 genomes] |
rs497036 | 0.80[EUR][1000 genomes] |
rs501651 | 0.93[EUR][1000 genomes] |
rs508534 | 0.94[EUR][1000 genomes] |
rs515295 | 0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs517207 | 0.91[EUR][1000 genomes] |
rs533694 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs534625 | 0.93[EUR][1000 genomes] |
rs551983 | 0.94[EUR][1000 genomes] |
rs554410 | 0.90[EUR][1000 genomes] |
rs555309 | 0.93[EUR][1000 genomes] |
rs559055 | 0.92[EUR][1000 genomes] |
rs559271 | 0.94[EUR][1000 genomes] |
rs563373 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs567049 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs567995 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs568054 | 0.96[EUR][1000 genomes] |
rs571436 | 0.92[EUR][1000 genomes] |
rs577672 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs579488 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs583074 | 0.96[EUR][1000 genomes] |
rs597144 | 0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs610237 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs610707 | 0.92[EUR][1000 genomes] |
rs611454 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs611550 | 0.92[EUR][1000 genomes] |
rs612749 | 0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs613276 | 0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs625571 | 0.92[EUR][1000 genomes] |
rs632002 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs639289 | 0.90[EUR][1000 genomes] |
rs639749 | 0.91[EUR][1000 genomes] |
rs642403 | 0.91[EUR][1000 genomes] |
rs647043 | 0.81[EUR][1000 genomes] |
rs657940 | 0.84[EUR][1000 genomes] |
rs657941 | 0.84[EUR][1000 genomes] |
rs661838 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rs676567 | 0.93[EUR][1000 genomes] |
rs799385 | 0.90[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024776 | chr6:149398652-149654593 | Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
2 | nsv1015360 | chr6:149609804-149649982 | Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv1024106 | chr6:149622349-149745053 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:149626000-149626400 | Weak transcription | Brain Anterior Caudate | brain |
2 | chr6:149626200-149627000 | Enhancers | Primary hematopoietic stem cells | blood |
3 | chr6:149626200-149627000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
4 | chr6:149626200-149627200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |