Variant report

Variant	rs519137
Chromosome Location	chr19:44189160-44189161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13344768	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28468406	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28677840	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs346060	0.85[CEU][hapmap]
rs346061	0.85[CEU][hapmap]
rs399300	0.81[EUR][1000 genomes]
rs466266	0.84[EUR][1000 genomes]
rs4802190	0.88[ASN][1000 genomes]
rs4802191	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4802192	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs520130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59684608	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs740590	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv833839	chr19:44099813-44272299	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44180400-44191000	Weak transcription	Gastric	stomach
2	chr19:44180600-44190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:44180600-44194200	Weak transcription	Spleen	Spleen
4	chr19:44184000-44190800	Weak transcription	Hela-S3	cervix
5	chr19:44184800-44190400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:44185600-44189400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr19:44187400-44190600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:44187600-44192000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr19:44187800-44190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr19:44187800-44191000	Weak transcription	A549	lung
11	chr19:44188000-44190800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr19:44188400-44191000	Weak transcription	Stomach Mucosa	stomach
13	chr19:44189000-44191600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr19:44189000-44191600	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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