Variant report

Variant	rs524161
Chromosome Location	chr6:149636235-149636236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:149636134-149639393	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149635359..149638022-chr6:149700186..149702826,2	K562	blood:
2	chr6:149409902..149411675-chr6:149636224..149638635,2	K562	blood:
3	chr6:149591541..149593325-chr6:149634432..149636846,2	MCF-7	breast:
4	chr6:149619251..149620814-chr6:149634430..149637387,2	K562	blood:
5	chr6:149625453..149629470-chr6:149636058..149640474,5	MCF-7	breast:
6	chr6:149628297..149630405-chr6:149634848..149636468,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs473451	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs475342	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs520852	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs545656	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015360	chr6:149609804-149649982	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149628000-149637800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:149628600-149637200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:149632400-149637200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:149634600-149636600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:149634800-149637200	Weak transcription	K562	blood
6	chr6:149635000-149637200	Weak transcription	Dnd41	blood
7	chr6:149635200-149636600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:149635800-149637400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:149635800-149637400	Weak transcription	Fetal Heart	heart
10	chr6:149636000-149637200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:149636200-149637400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:149636200-149637400	Weak transcription	Fetal Brain Male	brain
13	chr6:149636200-149637400	Weak transcription	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links