Variant report

Variant	rs524170
Chromosome Location	chr18:8671990-8671991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs321650	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34405335	1.00[EUR][1000 genomes]
rs373423	0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs512116	1.00[EUR][1000 genomes]
rs513911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs524445	1.00[EUR][1000 genomes]
rs527188	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs597151	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs598320	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs627367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73388260	1.00[EUR][1000 genomes]
rs7342989	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450483	chr18:8670052-8673550	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8662200-8673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:8667000-8672800	Weak transcription	A549	lung
4	chr18:8668800-8673000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr18:8669600-8672200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr18:8669600-8674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:8671800-8673000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr18:8671800-8673000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr18:8671800-8674600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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