Variant report

Variant	rs526434
Chromosome Location	chr6:74058006-74058007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000224221	Chromatin interaction
ENSG00000203909	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000235174	Chromatin interaction
ENSG00000203908	Chromatin interaction
ENSG00000207023	Chromatin interaction
ENSG00000231332	Chromatin interaction
ENSG00000135297	Chromatin interaction
ENSG00000164430	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000203907	Chromatin interaction
ENSG00000080007	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs311683	0.87[MEX][hapmap]
rs311685	0.87[MEX][hapmap]
rs311686	0.87[MEX][hapmap]
rs473675	0.84[AMR][1000 genomes]
rs508770	0.84[AMR][1000 genomes]
rs532631	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs553123	0.80[AMR][1000 genomes]
rs561930	0.80[AMR][1000 genomes]
rs780288	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs526434	C6orf150	cis	parietal	SCAN
rs526434	EEF1A1	cis	parietal	SCAN
rs526434	MTO1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74057400-74059400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:74057400-74061400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:74057800-74058400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr6:74057800-74058400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:74058000-74058200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:74058000-74058400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:74058000-74058800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr6:74058000-74059000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:74058000-74061800	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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