Variant report

Variant	rs527048
Chromosome Location	chr11:75371182-75371183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12417071	1.00[YRI][hapmap]
rs598847	0.85[CEU][hapmap]
rs606419	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs608585	1.00[YRI][hapmap]
rs640264	1.00[YRI][hapmap]
rs658653	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:75367200-75374200	Weak transcription	Fetal Brain Male	brain
3	chr11:75367200-75376400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:75367400-75377800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75367600-75371400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:75367600-75374400	Weak transcription	Fetal Brain Female	brain
7	chr11:75367600-75376400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:75367600-75376600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:75367600-75378200	Weak transcription	Aorta	Aorta
10	chr11:75367800-75373200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:75367800-75374200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:75367800-75374200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:75367800-75374600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:75367800-75377800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:75368000-75373400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:75369000-75374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:75371000-75371200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:75371000-75371600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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