Variant report

Variant	rs527280877
Chromosome Location	chr7:79965587-79965588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv528393	chr7:79964962-79969058	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79954200-79975400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79962800-79965600	Enhancers	Fetal Intestine Large	intestine
3	chr7:79963000-79966200	Enhancers	Fetal Intestine Small	intestine
4	chr7:79963400-79965600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:79963400-79966200	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:79964200-79965600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:79964800-79965600	Enhancers	Aorta	Aorta
8	chr7:79964800-79965600	Enhancers	Brain Angular Gyrus	brain
9	chr7:79965000-79965600	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr7:79965000-79965600	Flanking Active TSS	HSMMtube	muscle
11	chr7:79965000-79966200	Weak transcription	Small Intestine	intestine
12	chr7:79965200-79965600	Enhancers	Brain Cingulate Gyrus	brain
13	chr7:79965400-79965600	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:79965400-79965600	Enhancers	HSMM	muscle
15	chr7:79965400-79966200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:79965400-79966200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:79965400-79966400	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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