Variant report

Variant	rs527282039
Chromosome Location	chr9:16520635-16520636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16520489..16522214-chr9:16551948..16553682,2	MCF-7	breast:
2	chr9:16519927..16521803-chr9:16525394..16528325,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892647	chr9:16476144-16521534	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1028923	chr9:16519711-16547863	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16515600-16522000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:16515600-16532600	Weak transcription	Aorta	Aorta
3	chr9:16516200-16521200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:16516200-16521600	Weak transcription	HSMMtube	muscle
5	chr9:16516200-16521800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:16516200-16522000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:16516200-16522000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:16516200-16522000	Weak transcription	Left Ventricle	heart
9	chr9:16516200-16522200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:16516200-16524800	Weak transcription	Lung	lung
11	chr9:16516400-16521000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:16517000-16522000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:16517200-16521400	Weak transcription	Brain Substantia Nigra	brain
14	chr9:16517200-16521400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:16517200-16521400	Weak transcription	HSMM	muscle
16	chr9:16517200-16522000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:16517200-16522000	Weak transcription	Fetal Thymus	thymus
18	chr9:16517200-16522000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:16517200-16526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:16517600-16521200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:16517600-16521200	Weak transcription	NH-A	brain
22	chr9:16517600-16521600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:16517600-16521800	Weak transcription	Fetal Kidney	kidney
24	chr9:16517800-16520800	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:16517800-16521400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:16517800-16521400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:16518000-16521600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:16518000-16524200	Weak transcription	A549	lung
29	chr9:16518400-16521800	Weak transcription	HUVEC	blood vessel
30	chr9:16518600-16520800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr9:16518800-16521000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:16518800-16524800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:16519000-16520800	Enhancers	Adipose Nuclei	Adipose
34	chr9:16519000-16523200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:16519400-16522400	Enhancers	Fetal Lung	lung
36	chr9:16519600-16522000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:16519600-16525000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:16519800-16521200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr9:16520000-16521200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:16520000-16521800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:16520000-16522000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:16520000-16522200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr9:16520000-16522400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:16520000-16522400	Enhancers	NHDF-Ad	bronchial
45	chr9:16520000-16523200	Enhancers	Fetal Stomach	stomach
46	chr9:16520000-16524200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:16520200-16521400	Weak transcription	Ovary	ovary
48	chr9:16520200-16522000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr9:16520200-16522000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:16520200-16522000	Weak transcription	Psoas Muscle	Psoas

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