Variant report

Variant	rs527296623
Chromosome Location	chr19:42074149-42074150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41959542..41961581-chr19:42071875..42074732,2	K562	blood:
2	chr19:41943990..41946987-chr19:42072423..42074173,2	K562	blood:
3	chr19:42069422..42070951-chr19:42073170..42075974,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105341	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv911773	chr19:42001210-42085873	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1057624	chr19:42057334-42152828	Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1058847	chr19:42057334-42172442	Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1063241	chr19:42057334-42175160	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv519408	chr19:42066279-42171906	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv962986	chr19:42073874-42080172	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42069400-42077600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr19:42071400-42074600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr19:42071400-42076400	Weak transcription	GM12878-XiMat	blood
4	chr19:42071600-42076400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:42071600-42082000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr19:42072000-42074200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr19:42072000-42074200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr19:42072000-42075000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr19:42072400-42074800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr19:42072400-42076600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr19:42072600-42074800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr19:42072800-42078600	Weak transcription	Primary B cells from cord blood	blood
13	chr19:42073000-42074800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr19:42073000-42076600	Weak transcription	Primary T cells from cord blood	blood
15	chr19:42073200-42074800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr19:42073200-42076400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:42073800-42074200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr19:42073800-42074800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr19:42073800-42075200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr19:42073800-42075600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr19:42074000-42076000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr19:42074000-42076400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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