The 2.0 version of rSNPBase

Variant report

Variant rs527319801
Chromosome Location chr20:16264897-16264898
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16242400-16275000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr20:16247600-16290800 Weak transcription Primary T helper naive cells fromperipheralblood blood
3 chr20:16248600-16291400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr20:16248800-16267000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr20:16248800-16272600 Weak transcription Primary T cells from cord blood blood
6 chr20:16249000-16272800 Weak transcription Right Ventricle heart
7 chr20:16249200-16277400 Weak transcription Brain Substantia Nigra brain
8 chr20:16250000-16266800 Weak transcription Brain Inferior Temporal Lobe brain
9 chr20:16251000-16265000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr20:16252000-16270800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr20:16252000-16289400 Weak transcription Rectal Smooth Muscle rectum
12 chr20:16252400-16283000 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr20:16253000-16277800 Weak transcription Brain Angular Gyrus brain
14 chr20:16253600-16268200 Weak transcription Primary T cells fromperipheralblood blood
15 chr20:16254000-16265200 Weak transcription NHEK skin
16 chr20:16254000-16278800 Weak transcription Adipose Nuclei Adipose
17 chr20:16254000-16281400 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr20:16254000-16290800 Weak transcription Esophagus oesophagus
19 chr20:16254000-16298400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr20:16254200-16278600 Weak transcription Pancreas Pancrea
21 chr20:16254200-16284200 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr20:16255400-16283000 Weak transcription Fetal Lung lung
23 chr20:16261400-16272800 Weak transcription Osteobl bone
24 chr20:16261600-16270800 Weak transcription HepG2 liver
25 chr20:16262000-16266600 Weak transcription Thymus Thymus
26 chr20:16262600-16285400 Weak transcription Ovary ovary
27 chr20:16262600-16346200 Weak transcription Gastric stomach
28 chr20:16263000-16265600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr20:16263200-16265000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr20:16263400-16265200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr20:16263600-16273200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr20:16263600-16277200 Weak transcription Stomach Smooth Muscle stomach
33 chr20:16263800-16265000 Enhancers Fetal Muscle Trunk muscle
34 chr20:16263800-16265600 Enhancers Fetal Muscle Leg muscle
35 chr20:16263800-16265800 Enhancers Psoas Muscle Psoas
36 chr20:16264200-16265600 Enhancers Primary B cells from peripheral blood blood
37 chr20:16264400-16265200 Enhancers Fetal Adrenal Gland Adrenal Gland
38 chr20:16264400-16265200 Enhancers Small Intestine intestine
39 chr20:16264400-16265200 Enhancers HSMM muscle
40 chr20:16264400-16265600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr20:16264400-16265600 Enhancers Fetal Intestine Large intestine
42 chr20:16264400-16281600 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr20:16264600-16265000 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr20:16264600-16265200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr20:16264600-16265400 Enhancers Muscle Satellite Cultured Cells --
46 chr20:16264600-16265600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
47 chr20:16264600-16265600 Flanking Active TSS Duodenum Mucosa Duodenum
48 chr20:16264600-16265600 Enhancers Left Ventricle heart
49 chr20:16264600-16284000 Weak transcription Aorta Aorta
50 chr20:16264800-16265000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015