Variant report

Variant	rs527346255
Chromosome Location	chr22:33453701-33453702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32846948-32860159..22:33452523-33459358	Hela-S3	cervix:
2	22:32360288-32405313..22:33452523-33459358	H1-hESC	embryonic stem cell:	embryo
3	22:33030812-33041554..22:33452523-33459358	GM12878	blood:

Variant related genes	Relation type
ENSG00000251890	Chromatin interaction
ENSG00000240647	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000230866	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	esv3390652	chr22:33452977-33455825	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33450800-33454600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr22:33451200-33454800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
3	chr22:33452200-33454800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
4	chr22:33452400-33453800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr22:33452600-33454600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
6	chr22:33452800-33454000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr22:33452800-33454000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr22:33452800-33454000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr22:33452800-33454200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr22:33452800-33454800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr22:33453000-33453800	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
12	chr22:33453000-33454000	Bivalent/Poised TSS	Fetal Brain Female	brain
13	chr22:33453000-33454400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr22:33453200-33453800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
15	chr22:33453200-33453800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr22:33453200-33454000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr22:33453400-33453800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr22:33453400-33453800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr22:33453400-33453800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr22:33453400-33453800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr22:33453400-33453800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
22	chr22:33453400-33453800	Flanking Bivalent TSS/Enh	HepG2	liver
23	chr22:33453400-33454000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr22:33453400-33454000	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
25	chr22:33453400-33454000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr22:33453400-33454000	Bivalent Enhancer	Adipose Nuclei	Adipose
27	chr22:33453400-33454000	Bivalent Enhancer	Placenta	Placenta
28	chr22:33453400-33454200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
29	chr22:33453400-33454800	Bivalent Enhancer	NHEK	skin
30	chr22:33453600-33453800	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
31	chr22:33453600-33453800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr22:33453600-33453800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr22:33453600-33453800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
34	chr22:33453600-33453800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
35	chr22:33453600-33453800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr22:33453600-33453800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr22:33453600-33453800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
38	chr22:33453600-33453800	Bivalent Enhancer	Esophagus	oesophagus
39	chr22:33453600-33453800	Bivalent Enhancer	Fetal Heart	heart
40	chr22:33453600-33453800	Bivalent/Poised TSS	Fetal Kidney	kidney
41	chr22:33453600-33453800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr22:33453600-33453800	Bivalent Enhancer	Fetal Stomach	stomach
43	chr22:33453600-33453800	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
44	chr22:33453600-33453800	Bivalent Enhancer	Right Ventricle	heart
45	chr22:33453600-33453800	Active TSS	Spleen	Spleen
46	chr22:33453600-33454000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr22:33453600-33454000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr22:33453600-33454000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr22:33453600-33454000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
50	chr22:33453600-33454000	Bivalent Enhancer	Fetal Lung	lung

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