Variant report

Variant	rs527379559
Chromosome Location	chr4:74106583-74106584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74084419..74090074-chr4:74102131..74108477,7	K562	blood:

Variant related genes	Relation type
ENSG00000132466	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1849323	chr4:73926670-74115116	Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1000509	chr4:73968978-74206949	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv879486	chr4:74031423-74114322	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1793600	chr4:74046221-74116012	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv879489	chr4:74050725-74115116	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
7	esv3410570	chr4:74055180-74122498	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
8	esv1803963	chr4:74105068-74116012	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74056000-74123000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:74059600-74123000	Weak transcription	Esophagus	oesophagus
3	chr4:74078200-74123000	Weak transcription	Lung	lung
4	chr4:74087600-74116400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:74087800-74123400	Weak transcription	Gastric	stomach
6	chr4:74088800-74111000	Weak transcription	Colonic Mucosa	Colon
7	chr4:74089000-74121400	Weak transcription	Hela-S3	cervix
8	chr4:74089200-74108800	Weak transcription	Right Ventricle	heart
9	chr4:74089200-74109400	Weak transcription	Fetal Brain Female	brain
10	chr4:74089200-74111000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:74089200-74111600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:74089200-74117600	Weak transcription	NHDF-Ad	bronchial
13	chr4:74089200-74122000	Weak transcription	Aorta	Aorta
14	chr4:74089400-74121800	Weak transcription	NHLF	lung
15	chr4:74089600-74111800	Weak transcription	Fetal Heart	heart
16	chr4:74089800-74112000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:74091000-74111000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:74091200-74107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:74091200-74110400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:74093200-74116000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:74096600-74111000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:74097800-74111000	Weak transcription	Psoas Muscle	Psoas
23	chr4:74099800-74122400	Weak transcription	Stomach Mucosa	stomach
24	chr4:74100800-74111600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:74100800-74117400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:74100800-74117600	Weak transcription	Osteobl	bone
27	chr4:74100800-74119800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:74101000-74106800	Weak transcription	HUVEC	blood vessel
29	chr4:74101000-74108600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr4:74101000-74109000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:74101000-74109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:74101000-74110600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:74101000-74110600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:74101000-74111000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:74101000-74111000	Weak transcription	HSMMtube	muscle
36	chr4:74101000-74111600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:74101000-74111800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr4:74101000-74111800	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:74101000-74116000	Weak transcription	Spleen	Spleen
40	chr4:74101000-74117400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr4:74101000-74117600	Weak transcription	Brain Anterior Caudate	brain
42	chr4:74101000-74118800	Weak transcription	HSMM	muscle
43	chr4:74101000-74119600	Weak transcription	Fetal Brain Male	brain
44	chr4:74101000-74119800	Weak transcription	Fetal Lung	lung
45	chr4:74101000-74121200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:74101000-74122000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:74101000-74122200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:74101000-74122600	Weak transcription	Fetal Stomach	stomach
49	chr4:74101000-74123000	Weak transcription	Placenta	Placenta
50	chr4:74101200-74108000	Weak transcription	Muscle Satellite Cultured Cells	--

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