Variant report

Variant	rs527399104
Chromosome Location	chr6:142969968-142969969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2762618	chr6:142969785-142972917	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142967200-142973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:142967200-142973600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:142967200-142975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:142967400-142971800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:142967600-142971200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:142968000-142972800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:142968200-142970000	Enhancers	Fetal Lung	lung
8	chr6:142968400-142973200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:142968600-142970000	Enhancers	HepG2	liver
10	chr6:142969200-142970000	Weak transcription	Pancreas	Pancrea
11	chr6:142969400-142973400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:142969600-142970000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr6:142969600-142972400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:142969600-142972600	Weak transcription	Fetal Brain Male	brain
15	chr6:142969800-142970000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:142969800-142970200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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