Variant report

Variant	rs527403301
Chromosome Location	chr11:34193070-34193071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34192703..34198960-chr11:34377862..34381176,7	MCF-7	breast:
2	chr11:34185430..34188378-chr11:34191219..34194935,5	MCF-7	breast:
3	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
4	chr11:34186526..34189474-chr11:34192955..34194776,3	MCF-7	breast:
5	chr11:34187334..34191068-chr11:34191112..34197188,7	K562	blood:
6	chr11:34187306..34189277-chr11:34191112..34193482,2	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523431	chr11:34192092-34199849	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:34174600-34193400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:34176800-34195600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:34177000-34196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:34177400-34195400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:34177600-34194600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:34177600-34196200	Weak transcription	Primary T cells from cord blood	blood
9	chr11:34177800-34195800	Weak transcription	Spleen	Spleen
10	chr11:34177800-34196000	Weak transcription	GM12878-XiMat	blood
11	chr11:34178800-34195200	Weak transcription	Hela-S3	cervix
12	chr11:34179200-34195400	Weak transcription	Adipose Nuclei	Adipose
13	chr11:34179400-34196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:34179600-34193600	Strong transcription	Liver	Liver
15	chr11:34180000-34195200	Strong transcription	HepG2	liver
16	chr11:34180600-34195400	Weak transcription	Fetal Thymus	thymus
17	chr11:34181400-34195400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:34182200-34195400	Weak transcription	Osteobl	bone
19	chr11:34182800-34196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:34183000-34195200	Strong transcription	Stomach Smooth Muscle	stomach
21	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
22	chr11:34183800-34194400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:34184200-34195400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:34184200-34195400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:34184200-34195800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:34184400-34195400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:34184600-34196000	Weak transcription	Gastric	stomach
28	chr11:34184800-34195400	Weak transcription	Brain Anterior Caudate	brain
29	chr11:34185000-34195400	Weak transcription	Brain Angular Gyrus	brain
30	chr11:34187000-34195400	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:34188400-34195000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:34188400-34196200	Weak transcription	Esophagus	oesophagus
33	chr11:34189200-34195200	Weak transcription	Brain Germinal Matrix	brain
34	chr11:34189600-34195400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:34189600-34195800	Weak transcription	Thymus	Thymus
36	chr11:34190200-34195600	Weak transcription	Fetal Brain Female	brain
37	chr11:34190400-34194600	Weak transcription	Fetal Stomach	stomach
38	chr11:34190400-34195000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:34190400-34195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:34190400-34195600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:34190400-34195800	Weak transcription	Pancreas	Pancrea
42	chr11:34190600-34195800	Weak transcription	NH-A	brain
43	chr11:34190600-34196000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:34191200-34193400	Strong transcription	HSMM	muscle
45	chr11:34191400-34193400	Strong transcription	Brain Substantia Nigra	brain
46	chr11:34191400-34194600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:34191400-34195000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:34191600-34194600	Weak transcription	Lung	lung
49	chr11:34191800-34193400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:34191800-34193400	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links