Variant report

Variant	rs527459548
Chromosome Location	chr10:27793149-27793150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr10:27792894-27793359	HCT-116	colon:	n/a	n/a
2	ATF1	chr10:27792744-27793332	K562	blood:	n/a	n/a
3	POLR2A	chr10:27792790-27793456	HUVEC	blood vessel:	n/a	n/a
4	NRF1	chr10:27792778-27793431	GM12878	blood:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793061-27793072 chr10:27793214-27793223
5	YY1	chr10:27792899-27793494	GM12892	blood:	n/a	n/a
6	POLR2A	chr10:27792739-27793726	GM12891	blood:	n/a	n/a
7	YY1	chr10:27792915-27793442	ECC-1	luminal epithelium:	n/a	n/a
8	YY1	chr10:27793033-27793524	K562	blood:	n/a	n/a
9	EP300	chr10:27792863-27793338	GM12878	blood:	n/a	chr10:27793047-27793063
10	FOS	chr10:27792927-27793222	MCF10A-Er-Src	breast:	n/a	n/a
11	MAX	chr10:27792778-27793567	MCF-7	breast:	n/a	n/a
12	TAF1	chr10:27792756-27793409	GM12878	blood:	n/a	n/a
13	HA-E2F1	chr10:27792861-27793675	MCF-7	breast:	n/a	chr10:27793215-27793224 chr10:27793062-27793071
14	POLR2A	chr10:27792737-27793495	MCF10A-Er-Src	breast:	n/a	n/a
15	USF1	chr10:27792898-27793403	A549	lung:	n/a	n/a
16	IRF4	chr10:27792772-27793441	GM12878	blood:	n/a	n/a
17	POLR2A	chr10:27792786-27793550	HUVEC	blood vessel:	n/a	n/a
18	TRIM28	chr10:27792688-27793442	K562	blood:	n/a	n/a
19	CREB1	chr10:27792908-27793406	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr10:27792742-27793781	ProgFib	skin:	n/a	n/a
21	POLR2A	chr10:27792614-27793956	H1-hESC	embryonic stem cell:	n/a	n/a
22	RELA	chr10:27792471-27793482	GM15510	blood:	n/a	n/a
23	TAF1	chr10:27792736-27793664	MCF-7	breast:	n/a	n/a
24	POU2F2	chr10:27792869-27793492	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:27792627-27793625	GM12878	blood:	n/a	n/a
26	ELF1	chr10:27792844-27793382	K562	blood:	n/a	n/a
27	ELF1	chr10:27792861-27793400	K562	blood:	n/a	n/a
28	MYBL2	chr10:27792707-27793580	HepG2	liver:	n/a	n/a
29	ARID3A	chr10:27792879-27793396	HepG2	liver:	n/a	n/a
30	E2F6	chr10:27792813-27793288	K562	blood:	n/a	chr10:27793215-27793224 chr10:27793062-27793071
31	JUND	chr10:27792843-27793475	A549	lung:	n/a	n/a
32	TBP	chr10:27792657-27793662	K562	blood:	n/a	n/a
33	HEY1	chr10:27792883-27793667	HepG2	liver:	n/a	chr10:27792998-27793013 chr10:27793508-27793523
34	GABPA	chr10:27792737-27793312	K562	blood:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
35	ELF1	chr10:27792796-27793592	MCF-7	breast:	n/a	chr10:27793473-27793485
36	CTCF	chr10:27793115-27793611	GM12892	blood:	n/a	n/a
37	EP300	chr10:27792762-27793308	GM12878	blood:	n/a	chr10:27793047-27793063
38	BCLAF1	chr10:27792827-27793409	K562	blood:	n/a	chr10:27793004-27793013
39	POLR2A	chr10:27792812-27793550	HepG2	liver:	n/a	n/a
40	ARID3A	chr10:27792795-27793338	K562	blood:	n/a	n/a
41	POLR2A	chr10:27792828-27793494	Hela-S3	cervix:	n/a	n/a
42	GABPA	chr10:27792885-27793431	GM12878	blood:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
43	SPI1	chr10:27793034-27793329	K562	blood:	n/a	n/a
44	GTF2F1	chr10:27792955-27793286	H1-hESC	embryonic stem cell:	n/a	n/a
45	GABPA	chr10:27792734-27793492	MCF-7	breast:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
46	ETS1	chr10:27792994-27793472	GM12878	blood:	n/a	n/a
47	GABPA	chr10:27792776-27793422	A549	lung:	n/a	chr10:27793214-27793225 chr10:27793211-27793225 chr10:27793061-27793072 chr10:27793061-27793075 chr10:27793063-27793072 chr10:27793216-27793225 chr10:27793058-27793072 chr10:27793214-27793223
48	TCF3	chr10:27792590-27793540	GM12878	blood:	n/a	n/a
49	RCOR1	chr10:27792614-27793491	K562	blood:	n/a	n/a
50	POLR2A	chr10:27793058-27793431	GM12891	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:27793118-27793168	AG04449	skin:	fetal
2	chr10:27793116-27793166	PFSK-1	brain:	n/a
3	chr10:27793118-27793168	ovcar-3	ovarian:	n/a
4	chr10:27793124-27793174	Caco-2	colon:	n/a
5	chr10:27793124-27793174	ECC-1	luminal epithelium:	n/a
6	chr10:27793124-27793174	MCF10A-Er-Src	breast:	n/a
7	chr10:27793124-27793174	Hepatocyte	liver:	n/a
8	chr10:27793118-27793168	HUVEC	blood vessel:	n/a
9	chr10:27793124-27793174	BJ	skin:	n/a
10	chr10:27793118-27793168	HCF	heart:	n/a
11	chr10:27793116-27793166	HL-60	blood:	n/a
12	chr10:27793116-27793166	NHDF-neo	bronchial:	n/a
13	chr10:27793118-27793168	HMEC	breast:	n/a
14	chr10:27793116-27793166	HPAEpiC	pulmonary alveolar:	n/a
15	chr10:27793118-27793168	SAEC	small airway:	n/a
16	chr10:27793124-27793174	GM12878	blood:	n/a
17	chr10:27793116-27793166	U87	brain:	n/a
18	chr10:27793124-27793174	HEEpiC	esophagus:	n/a
19	chr10:27793116-27793166	HUVEC	blood vessel:	n/a
20	chr10:27793116-27793166	NHBE	bronchial:	n/a
21	chr10:27793118-27793168	GM12878	blood:	n/a
22	chr10:27793116-27793166	GM06990	blood:	n/a
23	chr10:27793118-27793168	SK-N-SH_RA	brain:	n/a
24	chr10:27793124-27793174	GM19239	blood:	n/a
25	chr10:27793124-27793174	U87	brain:	n/a
26	chr10:27793116-27793166	AG10803	skin:	n/a
27	chr10:27793118-27793168	NHDF-neo	bronchial:	n/a
28	chr10:27793116-27793166	A549	lung:	n/a
29	chr10:27793118-27793168	GM06990	blood:	n/a
30	chr10:27793118-27793168	GM12891	blood:	n/a
31	chr10:27793116-27793166	NB4	blood:	n/a
32	chr10:27793124-27793174	HUVEC	blood vessel:	n/a
33	chr10:27793124-27793174	NH-A	brain:	n/a
34	chr10:27793124-27793174	K562	blood:	n/a
35	chr10:27793116-27793166	HRPEpiC	eye:	n/a
36	chr10:27793116-27793166	BE2_C	brain:	n/a
37	chr10:27793118-27793168	HRPEpiC	eye:	n/a
38	chr10:27793124-27793174	BE2_C	brain:	n/a
39	chr10:27793124-27793174	HRCEpiC	kidney:	n/a
40	chr10:27793116-27793166	AG09309	skin:	n/a
41	chr10:27793116-27793166	IMR90	lung:	fetal
42	chr10:27793118-27793168	AG09309	skin:	n/a
43	chr10:27793116-27793166	SK-N-MC	brain:	n/a
44	chr10:27793124-27793174	NT2-D1	testis:	n/a
45	chr10:27793124-27793174	MCF-7	breast:	n/a
46	chr10:27793118-27793168	PFSK-1	brain:	n/a
47	chr10:27793116-27793166	GM12892	blood:	n/a
48	chr10:27793124-27793174	HCM	heart:	n/a
49	chr10:27793124-27793174	HAEpiC	amniotic membrane:	n/a
50	chr10:27793124-27793174	AoSMC	blood vessel:	n/a

Variant related genes	Relation type
RAB18	TF binding region
RAB18	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv825319	chr10:27792807-27795876	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27792400-27793200	Active TSS	Brain Germinal Matrix	brain
2	chr10:27792400-27793800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:27792400-27794200	Active TSS	Fetal Brain Male	brain
4	chr10:27792400-27794400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:27792400-27794600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:27792400-27794800	Active TSS	Fetal Kidney	kidney
7	chr10:27792400-27795000	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:27792600-27793200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr10:27792600-27793200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:27792600-27794000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:27792600-27794000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:27792600-27794000	Active TSS	Fetal Brain Female	brain
13	chr10:27792600-27794400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr10:27792600-27794400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:27792600-27794400	Active TSS	Fetal Muscle Trunk	muscle
16	chr10:27792600-27794600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:27792600-27794800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:27792600-27794800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:27792600-27794800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:27792600-27794800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:27792600-27795000	Active TSS	Right Atrium	heart
22	chr10:27792600-27795200	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr10:27792800-27793600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:27792800-27793800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:27792800-27793800	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr10:27792800-27794000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:27792800-27794000	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr10:27792800-27794000	Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr10:27792800-27794000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr10:27792800-27794000	Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr10:27792800-27794000	Active TSS	Fetal Stomach	stomach
32	chr10:27792800-27794200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:27792800-27794200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:27792800-27794200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:27792800-27794200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:27792800-27794200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:27792800-27794200	Active TSS	Fetal Heart	heart
38	chr10:27792800-27794200	Active TSS	Gastric	stomach
39	chr10:27792800-27794200	Active TSS	Lung	lung
40	chr10:27792800-27794200	Active TSS	Pancreas	Pancrea
41	chr10:27792800-27794400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr10:27792800-27794400	Active TSS	Aorta	Aorta
43	chr10:27792800-27794400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr10:27792800-27794400	Active TSS	Fetal Intestine Large	intestine
45	chr10:27792800-27794400	Active TSS	Fetal Intestine Small	intestine
46	chr10:27792800-27794400	Active TSS	Ovary	ovary
47	chr10:27792800-27794400	Active TSS	Placenta Amnion	Placenta Amnion
48	chr10:27792800-27794600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:27792800-27794600	Active TSS	Colon Smooth Muscle	Colon
50	chr10:27792800-27794600	Active TSS	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links