Variant report

Variant rs527460397
Chromosome Location chr3:48469805-48469806
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:48466200-48470000 Enhancers Spleen Spleen
2 chr3:48466400-48470000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
3 chr3:48466400-48470000 Flanking Active TSS Brain Germinal Matrix brain
4 chr3:48466600-48470000 Enhancers Placenta Placenta
5 chr3:48466800-48470000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
6 chr3:48466800-48470200 Flanking Active TSS Stomach Smooth Muscle stomach
7 chr3:48467000-48470000 Flanking Active TSS Cortex derived primary cultured neurospheres brain
8 chr3:48467000-48470000 Flanking Active TSS Colon Smooth Muscle Colon
9 chr3:48467200-48470000 Flanking Active TSS HSMMtube muscle
10 chr3:48467200-48470200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr3:48467400-48470000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
12 chr3:48467800-48471400 Active TSS Brain Inferior Temporal Lobe brain
13 chr3:48468000-48470000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr3:48468000-48470000 Flanking Active TSS Ovary ovary
15 chr3:48468000-48470200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr3:48468000-48471400 Active TSS Brain Cingulate Gyrus brain
17 chr3:48468200-48470000 Flanking Active TSS Liver Liver
18 chr3:48468200-48470000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
19 chr3:48468200-48470200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr3:48468200-48470200 Flanking Active TSS Adipose Nuclei Adipose
21 chr3:48468400-48470200 Flanking Active TSS Muscle Satellite Cultured Cells --
22 chr3:48468600-48470000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr3:48468600-48470000 Flanking Active TSS Colonic Mucosa Colon
24 chr3:48468600-48470000 Flanking Active TSS Fetal Intestine Large intestine
25 chr3:48468600-48470000 Flanking Active TSS Rectal Mucosa Donor 31 rectum
26 chr3:48468600-48470200 Flanking Active TSS Duodenum Mucosa Duodenum
27 chr3:48468600-48470200 Flanking Active TSS HSMM muscle
28 chr3:48468600-48472000 Active TSS Fetal Kidney kidney
29 chr3:48468800-48470000 Flanking Active TSS Fetal Brain Male brain
30 chr3:48468800-48470000 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
31 chr3:48468800-48470000 Flanking Active TSS Pancreas Pancrea
32 chr3:48468800-48470000 Flanking Active TSS NHDF-Ad bronchial
33 chr3:48468800-48471800 Active TSS Aorta Aorta
34 chr3:48468800-48472000 Active TSS Pancreatic Islets Pancreatic Islet
35 chr3:48469000-48470000 Flanking Active TSS HUES6 Cell Line embryonic stem cell
36 chr3:48469000-48470000 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
37 chr3:48469000-48470000 Flanking Active TSS Fetal Heart heart
38 chr3:48469000-48470000 Flanking Active TSS Fetal Lung lung
39 chr3:48469000-48470000 Flanking Active TSS Hela-S3 cervix
40 chr3:48469000-48470200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
41 chr3:48469000-48470200 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin
42 chr3:48469000-48471600 Active TSS Brain Angular Gyrus brain
43 chr3:48469200-48470000 Flanking Active TSS H1 Cell Line embryonic stem cell
44 chr3:48469200-48470000 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
45 chr3:48469200-48470000 Flanking Active TSS A549 lung
46 chr3:48469200-48470200 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
47 chr3:48469200-48470200 Flanking Active TSS NH-A brain
48 chr3:48469400-48470000 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
49 chr3:48469400-48470000 Flanking Active TSS Brain Anterior Caudate brain
50 chr3:48469400-48470200 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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