Variant report

Variant	rs527475197
Chromosome Location	chr2:190172612-190172613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv961541	chr2:190172230-190181918	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190168400-190176200	Weak transcription	Pancreas	Pancrea
2	chr2:190169800-190174000	Weak transcription	Dnd41	blood
3	chr2:190170200-190176400	Weak transcription	Fetal Thymus	thymus
4	chr2:190170400-190173600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:190171000-190174200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:190171200-190172800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:190171200-190176200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:190171400-190173600	Weak transcription	Stomach Mucosa	stomach
9	chr2:190171400-190176200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr2:190171600-190172800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:190171600-190174000	Weak transcription	Primary T cells from cord blood	blood
12	chr2:190171800-190172800	Weak transcription	HSMMtube	muscle
13	chr2:190171800-190173600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr2:190172200-190173000	Enhancers	Small Intestine	intestine
15	chr2:190172200-190173200	Enhancers	Fetal Intestine Large	intestine
16	chr2:190172200-190174200	Enhancers	Fetal Intestine Small	intestine
17	chr2:190172400-190174000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr2:190172600-190174200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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