Variant report

Variant	rs527479232
Chromosome Location	chr4:15705477-15705478
allele	-/AG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15655590..15657245-chr4:15703796..15706264,2	K562	blood:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv3345585	chr4:15704254-15707452	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3414958	chr4:15704254-15708452	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv822493	chr4:15705039-15706373	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv20430	chr4:15705044-15706579	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv822494	chr4:15705315-15706264	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15697600-15723600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:15703200-15706600	Weak transcription	HepG2	liver
3	chr4:15703800-15705600	Active TSS	Stomach Smooth Muscle	stomach
4	chr4:15704200-15705600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:15704200-15705600	Active TSS	Rectal Smooth Muscle	rectum
6	chr4:15704200-15705800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:15704400-15705600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:15704400-15705600	Active TSS	Duodenum Mucosa	Duodenum
9	chr4:15704400-15705800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:15704600-15705800	Active TSS	Osteobl	bone
11	chr4:15704600-15706000	Active TSS	Primary hematopoietic stem cells	blood
12	chr4:15704600-15708200	Weak transcription	Fetal Heart	heart
13	chr4:15704800-15705800	Enhancers	Spleen	Spleen
14	chr4:15704800-15706200	Active TSS	Primary B cells from cord blood	blood
15	chr4:15705000-15705800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
16	chr4:15705000-15706200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:15705000-15706400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr4:15705000-15708400	Weak transcription	HSMMtube	muscle
19	chr4:15705000-15708600	Weak transcription	Liver	Liver
20	chr4:15705000-15708600	Weak transcription	Fetal Brain Female	brain
21	chr4:15705000-15735200	Weak transcription	Lung	lung
22	chr4:15705200-15705600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:15705200-15705600	Enhancers	Right Ventricle	heart
24	chr4:15705200-15705800	ZNF genes & repeats	Fetal Intestine Large	intestine
25	chr4:15705200-15706600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr4:15705200-15706600	Weak transcription	Brain Substantia Nigra	brain
27	chr4:15705200-15708200	Weak transcription	NHDF-Ad	bronchial
28	chr4:15705200-15708400	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:15705200-15708400	Weak transcription	Ovary	ovary
30	chr4:15705200-15716200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:15705200-15716200	Weak transcription	Brain Anterior Caudate	brain
32	chr4:15705200-15720400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr4:15705200-15720600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:15705200-15731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:15705400-15705600	Enhancers	Dnd41	blood
36	chr4:15705400-15707200	Weak transcription	Fetal Kidney	kidney
37	chr4:15705400-15707600	Weak transcription	Adipose Nuclei	Adipose
38	chr4:15705400-15708800	Weak transcription	Brain Angular Gyrus	brain
39	chr4:15705400-15708800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr4:15705400-15709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:15705400-15709600	Weak transcription	Fetal Intestine Small	intestine
42	chr4:15705400-15713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:15705400-15715800	Weak transcription	Fetal Lung	lung
44	chr4:15705400-15715800	Weak transcription	Fetal Stomach	stomach
45	chr4:15705400-15715800	Weak transcription	NH-A	brain
46	chr4:15705400-15716200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:15705400-15716200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:15705400-15716200	Weak transcription	A549	lung
49	chr4:15705400-15718800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:15705400-15727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links