Variant report

Variant	rs527595923
Chromosome Location	chr9:100760641-100760642
allele	-/AC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:100759588-100760654	K562	blood:	n/a	n/a
2	POLR2A	chr9:100759737-100760968	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:100759301-100760926	K562	blood:	n/a	n/a
4	POLR2A	chr9:100760640-100760779	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr9:100759621-100760871	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100683227..100687367-chr9:100758311..100762778,5	K562	blood:
2	chr9:100757927..100760728-chr9:100775253..100778756,3	MCF-7	breast:

Variant related genes	Relation type
ANP32B	TF binding region
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335186	chr9:100756939-100760935	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2540773	chr9:100760463-100762115	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100748000-100760800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr9:100748000-100767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:100748400-100761600	Weak transcription	Brain Anterior Caudate	brain
4	chr9:100749200-100767200	Weak transcription	Esophagus	oesophagus
5	chr9:100750000-100767200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:100750000-100767400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:100750800-100764000	Weak transcription	Fetal Brain Female	brain
8	chr9:100751000-100761800	Weak transcription	Right Atrium	heart
9	chr9:100751000-100764200	Weak transcription	Fetal Brain Male	brain
10	chr9:100751000-100765200	Weak transcription	Aorta	Aorta
11	chr9:100752000-100784000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:100753000-100761600	Weak transcription	HSMMtube	muscle
13	chr9:100753000-100767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr9:100753000-100768400	Weak transcription	Fetal Heart	heart
15	chr9:100753000-100769000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:100753400-100767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:100753600-100767200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:100754600-100784200	Strong transcription	Dnd41	blood
19	chr9:100754600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:100755200-100782200	Strong transcription	HepG2	liver
21	chr9:100755200-100783800	Strong transcription	NHEK	skin
22	chr9:100755400-100763800	Weak transcription	Gastric	stomach
23	chr9:100755400-100783000	Weak transcription	Stomach Mucosa	stomach
24	chr9:100755600-100769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr9:100755600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:100755800-100761400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:100755800-100782200	Strong transcription	K562	blood
28	chr9:100756000-100777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:100756200-100761600	Weak transcription	Ovary	ovary
30	chr9:100756200-100767200	Weak transcription	Colonic Mucosa	Colon
31	chr9:100756400-100763000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:100756400-100767200	Weak transcription	Spleen	Spleen
33	chr9:100756400-100772600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:100756400-100783600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:100756400-100783800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr9:100756400-100784400	Strong transcription	Fetal Thymus	thymus
37	chr9:100756600-100761600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr9:100756600-100762400	Weak transcription	Small Intestine	intestine
39	chr9:100756600-100763000	Strong transcription	Hela-S3	cervix
40	chr9:100756600-100767600	Weak transcription	Brain Germinal Matrix	brain
41	chr9:100756600-100785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr9:100756800-100765600	Strong transcription	Fetal Muscle Leg	muscle
43	chr9:100756800-100771600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:100756800-100771800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr9:100756800-100781200	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:100756800-100783000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:100756800-100783400	Strong transcription	HMEC	breast
48	chr9:100757000-100762600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:100757000-100762600	Strong transcription	NH-A	brain
50	chr9:100757000-100762800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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