Variant report

Variant	rs527598307
Chromosome Location	chr1:45671112-45671113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:45662426..45664020-chr1:45669808..45671855,2	MCF-7	breast:
2	chr1:45451641..45453252-chr1:45669605..45671686,2	MCF-7	breast:
3	chr1:45283980..45286629-chr1:45670146..45671659,2	K562	blood:
4	chr1:45665465..45667003-chr1:45668749..45671725,2	K562	blood:
5	chr1:45480075..45485962-chr1:45670647..45674355,5	MCF-7	breast:
6	chr1:45670063..45672201-chr1:45674093..45675823,3	K562	blood:
7	chr1:45669107..45671536-chr1:45764944..45767322,2	K562	blood:

Variant related genes	Relation type
ENSG00000070785	Chromatin interaction
ENSG00000202444	Chromatin interaction
ENSG00000126088	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv915644	chr1:45282802-45696079	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
5	esv3365432	chr1:45670715-45673638	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3444099	chr1:45670790-45673738	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45668000-45673800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:45668600-45672800	Active TSS	Fetal Brain Female	brain
3	chr1:45669400-45671200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:45669400-45673200	Active TSS	Brain Angular Gyrus	brain
5	chr1:45669400-45673400	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr1:45669600-45672600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr1:45670000-45672600	Active TSS	Brain Anterior Caudate	brain
8	chr1:45670000-45672600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr1:45670000-45672800	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr1:45670000-45673200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:45670000-45673400	Active TSS	Ovary	ovary
12	chr1:45670200-45671200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:45670200-45671400	Active TSS	Fetal Brain Male	brain
14	chr1:45670200-45672600	Active TSS	Brain Cingulate Gyrus	brain
15	chr1:45670200-45672600	Active TSS	Brain Hippocampus Middle	brain
16	chr1:45670200-45672600	Active TSS	Duodenum Mucosa	Duodenum
17	chr1:45670200-45672800	Active TSS	Rectal Smooth Muscle	rectum
18	chr1:45670400-45671200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
19	chr1:45670400-45671400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
20	chr1:45670400-45672600	Active TSS	Stomach Smooth Muscle	stomach
21	chr1:45670400-45672600	Active TSS	Hela-S3	cervix
22	chr1:45670400-45673200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:45670600-45671200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
24	chr1:45670600-45671200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:45670600-45671200	Active TSS	Fetal Stomach	stomach
26	chr1:45670600-45671400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr1:45670600-45671400	Active TSS	Right Atrium	heart
28	chr1:45670600-45671800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:45670600-45672600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:45670600-45672600	Active TSS	Brain Substantia Nigra	brain
31	chr1:45670600-45672600	Active TSS	Fetal Intestine Small	intestine
32	chr1:45670600-45672600	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr1:45670600-45672800	Active TSS	NHLF	lung
34	chr1:45670600-45673000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:45670600-45673000	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr1:45670600-45673200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr1:45670600-45673200	Active TSS	Colonic Mucosa	Colon
38	chr1:45670800-45671200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
39	chr1:45670800-45671200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
40	chr1:45670800-45671200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr1:45670800-45671200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr1:45670800-45671200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr1:45670800-45671200	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr1:45670800-45671200	Bivalent Enhancer	NHEK	skin
45	chr1:45670800-45671400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr1:45670800-45671400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:45670800-45671400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:45670800-45671400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
49	chr1:45670800-45671400	Flanking Bivalent TSS/Enh	NH-A	brain
50	chr1:45670800-45671600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links