Variant report

Variant	rs527616463
Chromosome Location	chr10:5734825-5734826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5733731..5736743-chr10:5750015..5755601,4	MCF-7	breast:
2	chr10:5487726..5489985-chr10:5734513..5736734,2	K562	blood:
3	chr10:5726775..5729176-chr10:5734287..5736106,2	MCF-7	breast:
4	chr10:5734758..5736346-chr10:5739333..5741720,2	MCF-7	breast:
5	chr10:5734808..5736462-chr10:5936256..5938867,2	K562	blood:
6	chr10:5706961..5708705-chr10:5733482..5736246,2	K562	blood:
7	chr10:5487726..5489985-chr10:5734513..5736734,3	K562	blood:
8	chr10:5732056..5734929-chr10:5855542..5857938,2	K562	blood:
9	chr10:5733787..5736575-chr10:5751182..5753712,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CALML3-1	chr10:5734779-5734881	NONHSAT011176

No data

Variant related genes	Relation type
ENSG00000272764	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000196372	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv549895	chr10:5712310-5735648	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv8600	chr10:5733691-5736727	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5728800-5746800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:5733600-5735400	Flanking Active TSS	NHEK	skin
3	chr10:5733800-5735400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr10:5733800-5735400	Bivalent Enhancer	Fetal Brain Male	brain
5	chr10:5733800-5735600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:5734000-5735000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:5734000-5735000	Active TSS	H1 Cell Line	embryonic stem cell
8	chr10:5734000-5735000	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr10:5734000-5735000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr10:5734000-5735000	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:5734000-5735000	Active TSS	Rectal Smooth Muscle	rectum
12	chr10:5734000-5735000	Active TSS	A549	lung
13	chr10:5734000-5735000	Active TSS	K562	blood
14	chr10:5734000-5735200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:5734000-5735400	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr10:5734000-5735400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:5734000-5735400	Active TSS	HepG2	liver
18	chr10:5734000-5735400	Flanking Active TSS	HMEC	breast
19	chr10:5734200-5735000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:5734200-5735000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:5734200-5735000	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr10:5734200-5735000	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr10:5734200-5735000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:5734200-5735000	Active TSS	Brain Angular Gyrus	brain
25	chr10:5734200-5735000	Active TSS	Brain Cingulate Gyrus	brain
26	chr10:5734200-5735000	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr10:5734200-5735000	Active TSS	Ovary	ovary
28	chr10:5734200-5735000	Active TSS	Right Ventricle	heart
29	chr10:5734200-5735200	Active TSS	H9 Cell Line	embryonic stem cell
30	chr10:5734200-5735200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:5734200-5735200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:5734200-5735200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr10:5734200-5735200	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr10:5734200-5735200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
35	chr10:5734200-5735200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:5734200-5735200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr10:5734200-5735200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:5734200-5735200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:5734200-5735200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:5734200-5735200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:5734200-5735200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr10:5734200-5735200	Flanking Active TSS	Fetal Thymus	thymus
43	chr10:5734200-5735200	Flanking Active TSS	Thymus	Thymus
44	chr10:5734200-5735200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:5734200-5735200	Flanking Active TSS	NH-A	brain
46	chr10:5734200-5735400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:5734200-5735400	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr10:5734200-5735400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr10:5734200-5735400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr10:5734200-5735400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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