Variant report

Variant	rs527634
Chromosome Location	chr9:15201745-15201746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11789697	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11793824	1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793825	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41265314	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472521	0.81[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508314	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs517928	0.92[ASW][hapmap];0.88[CEU][hapmap];0.82[GIH][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623137	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624443	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62538516	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62538517	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524381	chr9:15165032-15202417	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:15159000-15211200	Weak transcription	HMEC	breast
3	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:15166200-15211200	Weak transcription	NH-A	brain
6	chr9:15167400-15205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:15168200-15206800	Weak transcription	NHEK	skin
8	chr9:15170400-15211000	Weak transcription	Brain Angular Gyrus	brain
9	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
10	chr9:15177000-15213000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:15179400-15221000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:15181000-15211800	Weak transcription	NHLF	lung
13	chr9:15182000-15211400	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:15182200-15211400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:15182200-15229200	Weak transcription	Gastric	stomach
16	chr9:15182400-15205200	Weak transcription	Thymus	Thymus
17	chr9:15184000-15205400	Weak transcription	HUVEC	blood vessel
18	chr9:15185600-15225800	Weak transcription	Pancreas	Pancrea
19	chr9:15188400-15202600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr9:15188400-15211400	Weak transcription	Fetal Kidney	kidney
21	chr9:15190000-15207000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr9:15190800-15205200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:15191800-15211200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr9:15192200-15229200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:15192400-15223200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr9:15192600-15211000	Weak transcription	NHDF-Ad	bronchial
27	chr9:15192600-15211200	Weak transcription	Adipose Nuclei	Adipose
28	chr9:15192600-15211400	Weak transcription	Brain Anterior Caudate	brain
29	chr9:15192600-15213000	Weak transcription	Small Intestine	intestine
30	chr9:15192800-15205600	Weak transcription	Osteobl	bone
31	chr9:15193200-15205000	Weak transcription	HepG2	liver
32	chr9:15193200-15205400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:15193200-15205600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:15193200-15207400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:15193200-15212200	Weak transcription	Aorta	Aorta
36	chr9:15193400-15249600	Weak transcription	Colonic Mucosa	Colon
37	chr9:15195200-15205000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr9:15195400-15204800	Weak transcription	Lung	lung
39	chr9:15196000-15214200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr9:15196400-15206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr9:15196600-15211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr9:15196800-15205000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:15196800-15211400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:15197000-15203600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:15197000-15204800	Weak transcription	Ovary	ovary
46	chr9:15197000-15205400	Weak transcription	Fetal Lung	lung
47	chr9:15197000-15205600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:15197000-15205600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:15197000-15211000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:15197000-15213000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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