Variant report

Variant	rs527727863
Chromosome Location	chr10:22620097-22620098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825293	chr10:22575226-22637618	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv825296	chr10:22591339-22638994	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894950	chr10:22591830-22639903	Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv894954	chr10:22594765-22621960	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv1817463	chr10:22594765-22626662	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv894955	chr10:22594765-22631256	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv894956	chr10:22594765-22633193	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv894957	chr10:22594765-22637381	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv1816646	chr10:22594765-22639707	Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv894958	chr10:22594765-22639903	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv825297	chr10:22596793-22637576	Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv825299	chr10:22596793-22638994	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv1820141	chr10:22597467-22625441	Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
17	nsv550207	chr10:22605112-22631256	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	nsv825300	chr10:22619187-22620592	Weak transcription Strong transcription Enhancers	TF binding region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22615000-22622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:22615000-22622800	Weak transcription	Spleen	Spleen
3	chr10:22615000-22623400	Weak transcription	Gastric	stomach
4	chr10:22615200-22620400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:22615200-22621000	Weak transcription	Fetal Stomach	stomach
6	chr10:22615200-22621400	Weak transcription	Esophagus	oesophagus
7	chr10:22615200-22622000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:22615200-22622800	Weak transcription	Colonic Mucosa	Colon
9	chr10:22615200-22622800	Weak transcription	Pancreas	Pancrea
10	chr10:22615200-22623000	Weak transcription	Ovary	ovary
11	chr10:22615200-22623000	Weak transcription	Right Ventricle	heart
12	chr10:22615400-22620200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:22615600-22620600	Strong transcription	Liver	Liver
14	chr10:22615800-22621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:22615800-22621200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:22616000-22620800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:22616200-22622600	Weak transcription	HepG2	liver
18	chr10:22617200-22620800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:22618400-22621800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:22618400-22622800	Weak transcription	Lung	lung
21	chr10:22618600-22621200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:22618600-22621200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:22618600-22621600	Weak transcription	Brain Germinal Matrix	brain
24	chr10:22618600-22623800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:22618600-22624000	Weak transcription	Aorta	Aorta
26	chr10:22618800-22620800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr10:22618800-22621400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr10:22618800-22622800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:22619000-22620400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:22619000-22620400	Weak transcription	Left Ventricle	heart
31	chr10:22619000-22620600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:22619000-22621200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:22619000-22621600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:22619000-22622000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:22619000-22622000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:22619000-22622000	Weak transcription	Fetal Thymus	thymus
37	chr10:22619000-22622200	Weak transcription	K562	blood
38	chr10:22619000-22622600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:22619000-22622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:22619000-22622600	Weak transcription	HSMMtube	muscle
41	chr10:22619000-22622600	Weak transcription	NHLF	lung
42	chr10:22619000-22622800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:22619000-22622800	Weak transcription	Psoas Muscle	Psoas
44	chr10:22619000-22623200	Weak transcription	Brain Angular Gyrus	brain
45	chr10:22619000-22623600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:22619000-22624200	Weak transcription	A549	lung
47	chr10:22619200-22620200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:22619200-22620400	Weak transcription	Colon Smooth Muscle	Colon
49	chr10:22619200-22620800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:22619200-22620800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links