Variant report

Variant	rs527775825
Chromosome Location	chr6:118027643-118027644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv830786	chr6:118026955-118201660	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117999000-118039800	Weak transcription	Gastric	stomach
2	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:117999200-118028200	Weak transcription	Hela-S3	cervix
4	chr6:117999200-118029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:118000800-118029400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:118008800-118029600	Weak transcription	Colonic Mucosa	Colon
7	chr6:118009400-118039800	Weak transcription	Small Intestine	intestine
8	chr6:118012600-118039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:118014400-118029000	Weak transcription	A549	lung
10	chr6:118015600-118030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:118016600-118029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:118016600-118040000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:118016800-118028800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:118016800-118029400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:118016800-118032400	Weak transcription	Fetal Stomach	stomach
16	chr6:118017000-118029800	Weak transcription	Brain Substantia Nigra	brain
17	chr6:118017000-118033200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:118017000-118040000	Weak transcription	Pancreas	Pancrea
19	chr6:118017600-118029400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:118017800-118029400	Weak transcription	Fetal Brain Male	brain
21	chr6:118018000-118029600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:118018000-118029600	Weak transcription	Psoas Muscle	Psoas
23	chr6:118021600-118028400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:118021600-118032600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:118021800-118028400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:118021800-118028400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:118022600-118028200	Strong transcription	HepG2	liver
28	chr6:118022800-118028000	Strong transcription	HSMM	muscle
29	chr6:118022800-118028200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:118022800-118028200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:118022800-118028400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:118022800-118028400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:118022800-118028400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:118023000-118027800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:118023000-118027800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:118023000-118028000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:118023000-118028000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:118023000-118028200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:118023000-118028200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:118023000-118028200	Strong transcription	Primary T cells from cord blood	blood
41	chr6:118023000-118028200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr6:118023000-118028200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:118023000-118028200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:118023000-118028200	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr6:118023000-118028200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:118023000-118028200	Strong transcription	Adipose Nuclei	Adipose
47	chr6:118023000-118028400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:118023000-118028400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:118023000-118028400	Strong transcription	Dnd41	blood
50	chr6:118023200-118028000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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