Variant report

Variant	rs527785681
Chromosome Location	chr13:93962542-93962543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93960806..93963273-chr13:94011770..94013409,2	K562	blood:
2	chr13:93962460..93964812-chr13:93979944..93982073,2	K562	blood:
3	chr13:93961269..93969594-chr13:93973410..93977735,11	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv900919	chr13:93957816-94030693	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1050202	chr13:93961478-93982388	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93952400-93965000	Weak transcription	Fetal Kidney	kidney
2	chr13:93957600-93968400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:93958200-93969800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:93961800-93963000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:93962000-93962600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:93962000-93962600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:93962000-93962800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:93962000-93962800	Enhancers	Osteobl	bone
9	chr13:93962200-93962600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:93962200-93962600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:93962200-93962600	Enhancers	Brain Hippocampus Middle	brain
12	chr13:93962200-93962600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr13:93962200-93962800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:93962200-93962800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:93962200-93962800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:93962200-93962800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr13:93962400-93962600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:93962400-93962600	Enhancers	Fetal Brain Male	brain
19	chr13:93962400-93962800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:93962400-93962800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:93962400-93962800	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links