Variant report

Variant	rs527788508
Chromosome Location	chr11:86665010-86665011
allele	-/TC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86664827..86670422-chr11:86747541..86750601,9	MCF-7	breast:
2	chr11:86651265..86655109-chr11:86664872..86666696,3	MCF-7	breast:
3	chr11:86649897..86655027-chr11:86664913..86668349,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166575	Chromatin interaction
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv3325080	chr11:86664929-86667677	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86653200-86665800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:86653400-86665200	Weak transcription	Fetal Heart	heart
3	chr11:86657600-86665200	Weak transcription	Brain Germinal Matrix	brain
4	chr11:86657600-86665400	Weak transcription	Small Intestine	intestine
5	chr11:86660200-86665200	Weak transcription	NHDF-Ad	bronchial
6	chr11:86661600-86665400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:86662600-86665400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:86663200-86665400	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr11:86663200-86667800	Active TSS	Right Ventricle	heart
10	chr11:86663400-86665200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:86663400-86665200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:86663400-86665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:86663400-86665200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:86663400-86665200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:86663400-86665200	Weak transcription	Gastric	stomach
16	chr11:86663400-86665200	Weak transcription	HSMM	muscle
17	chr11:86663400-86665200	Enhancers	NH-A	brain
18	chr11:86663400-86667400	Active TSS	Fetal Brain Female	brain
19	chr11:86663400-86667400	Active TSS	Left Ventricle	heart
20	chr11:86663400-86667600	Active TSS	Right Atrium	heart
21	chr11:86663400-86668000	Active TSS	Fetal Kidney	kidney
22	chr11:86663600-86665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:86663600-86665200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:86663600-86665200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr11:86663600-86665200	Active TSS	HepG2	liver
26	chr11:86663600-86665400	Active TSS	Fetal Muscle Trunk	muscle
27	chr11:86663600-86665400	Active TSS	Lung	lung
28	chr11:86663600-86665400	Weak transcription	Spleen	Spleen
29	chr11:86663600-86666000	Active TSS	Stomach Smooth Muscle	stomach
30	chr11:86663600-86667400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:86663600-86667400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:86663600-86667600	Active TSS	Psoas Muscle	Psoas
33	chr11:86663600-86667600	Active TSS	Rectal Smooth Muscle	rectum
34	chr11:86663600-86667800	Active TSS	Colon Smooth Muscle	Colon
35	chr11:86663600-86667800	Active TSS	Ovary	ovary
36	chr11:86663600-86668000	Active TSS	Aorta	Aorta
37	chr11:86663800-86665600	Active TSS	Adipose Nuclei	Adipose
38	chr11:86663800-86667400	Active TSS	Fetal Stomach	stomach
39	chr11:86664000-86665200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:86664000-86665200	Enhancers	K562	blood
41	chr11:86664000-86665400	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr11:86664000-86665800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:86664000-86665800	Active TSS	Colonic Mucosa	Colon
44	chr11:86664000-86666200	Flanking Active TSS	Liver	Liver
45	chr11:86664000-86667800	Active TSS	Brain Anterior Caudate	brain
46	chr11:86664000-86667800	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr11:86664200-86665200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:86664200-86665200	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr11:86664200-86665200	Weak transcription	Brain Angular Gyrus	brain
50	chr11:86664200-86665200	Active TSS	Duodenum Mucosa	Duodenum

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