Variant report

Variant	rs527817577
Chromosome Location	chr9:21327363-21327364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21326879..21332228-chr9:21332519..21336640,9	MCF-7	breast:
2	chr9:21325580..21327702-chr9:21329735..21331651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198642	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892736	chr9:21327141-21391698	Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21316600-21330600	Weak transcription	Small Intestine	intestine
2	chr9:21317200-21331600	Weak transcription	Esophagus	oesophagus
3	chr9:21317200-21331600	Weak transcription	Gastric	stomach
4	chr9:21318200-21330000	Weak transcription	Brain Anterior Caudate	brain
5	chr9:21318200-21330400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:21318800-21330600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:21318800-21331000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:21318800-21331200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:21318800-21331800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:21318800-21332600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:21318800-21332800	Weak transcription	Fetal Kidney	kidney
12	chr9:21319000-21332200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:21319000-21333200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:21319400-21329400	Weak transcription	Fetal Heart	heart
15	chr9:21319600-21333200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:21320600-21331600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:21321400-21331600	Weak transcription	Spleen	Spleen
18	chr9:21321600-21333400	Weak transcription	Colonic Mucosa	Colon
19	chr9:21322000-21331600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:21322000-21331600	Weak transcription	HepG2	liver
21	chr9:21322200-21333600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:21322400-21330400	Weak transcription	Psoas Muscle	Psoas
23	chr9:21322800-21330000	Weak transcription	Stomach Mucosa	stomach
24	chr9:21323400-21331800	Weak transcription	Aorta	Aorta
25	chr9:21323400-21333800	Weak transcription	Lung	lung
26	chr9:21323600-21330800	Weak transcription	Pancreas	Pancrea
27	chr9:21323600-21331600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:21323800-21331800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:21324000-21331400	Weak transcription	Right Ventricle	heart
30	chr9:21324000-21333000	Weak transcription	Placenta	Placenta
31	chr9:21324200-21330400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:21324200-21331600	Weak transcription	Fetal Thymus	thymus
33	chr9:21324200-21331600	Weak transcription	A549	lung
34	chr9:21324400-21329200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:21324400-21330000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:21324400-21330000	Weak transcription	Liver	Liver
37	chr9:21324400-21330200	Weak transcription	Brain Hippocampus Middle	brain
38	chr9:21324400-21330200	Weak transcription	Left Ventricle	heart
39	chr9:21324400-21330200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:21324400-21330400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:21324400-21330800	Weak transcription	Ovary	ovary
42	chr9:21324400-21331600	Weak transcription	Thymus	Thymus
43	chr9:21324400-21333200	Weak transcription	Primary B cells from cord blood	blood
44	chr9:21324400-21333200	Weak transcription	Fetal Stomach	stomach
45	chr9:21324400-21333400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:21324600-21328400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:21324600-21330400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:21324800-21328200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr9:21324800-21328200	Weak transcription	Brain Germinal Matrix	brain
50	chr9:21324800-21328400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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