Variant report

Variant	rs527897058
Chromosome Location	chr8:96169595-96169596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96161791..96169135-chr8:96169356..96174766,9	MCF-7	breast:
2	chr8:96166819..96170014-chr8:96194693..96197892,3	K562	blood:
3	chr8:96160643..96163475-chr8:96167715..96170557,2	K562	blood:
4	chr8:96166402..96170248-chr8:96170840..96172689,3	MCF-7	breast:
5	chr8:96167676..96169648-chr8:96260449..96262617,2	MCF-7	breast:
6	chr8:96164371..96167260-chr8:96168368..96170274,2	MCF-7	breast:
7	chr8:96146052..96148037-chr8:96169161..96171314,2	K562	blood:
8	chr8:96168897..96170558-chr8:96188215..96189760,2	K562	blood:
9	chr8:96063931..96065992-chr8:96169093..96171727,2	K562	blood:
10	chr8:95905678..95907784-chr8:96168831..96170506,2	K562	blood:
11	chr8:96070557..96072277-chr8:96168044..96170372,2	MCF-7	breast:
12	chr8:96146537..96149363-chr8:96168744..96170661,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175305	Chromatin interaction
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv819397	chr8:96168255-96177678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96147200-96172000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:96147800-96172200	Weak transcription	HSMM	muscle
3	chr8:96148400-96171600	Weak transcription	Fetal Stomach	stomach
4	chr8:96150400-96179200	Weak transcription	Fetal Lung	lung
5	chr8:96158200-96170800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:96162400-96172200	Weak transcription	Spleen	Spleen
7	chr8:96162400-96178800	Weak transcription	NH-A	brain
8	chr8:96162800-96171400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:96163200-96175400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:96163600-96171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:96163800-96171000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:96164000-96169800	Weak transcription	Fetal Intestine Small	intestine
13	chr8:96164000-96171000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:96164200-96171400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:96164200-96171600	Weak transcription	Osteobl	bone
16	chr8:96164400-96171200	Weak transcription	Brain Germinal Matrix	brain
17	chr8:96164600-96171800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:96164600-96174800	Weak transcription	HUVEC	blood vessel
19	chr8:96164800-96175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:96165000-96171000	Weak transcription	HSMMtube	muscle
21	chr8:96165000-96171800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr8:96165000-96174600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr8:96165200-96174400	Weak transcription	Dnd41	blood
24	chr8:96165400-96171000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:96165600-96174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr8:96165800-96169800	Genic enhancers	Primary B cells from cord blood	blood
27	chr8:96165800-96170400	Weak transcription	Stomach Mucosa	stomach
28	chr8:96165800-96172000	Weak transcription	Aorta	Aorta
29	chr8:96165800-96175000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:96166000-96175000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr8:96166400-96169600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr8:96166400-96169800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:96166400-96170200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr8:96166600-96169600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr8:96166600-96169800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr8:96166800-96170000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr8:96166800-96173800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:96167000-96170000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:96167000-96170200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:96167000-96171600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:96167000-96171600	Weak transcription	Thymus	Thymus
42	chr8:96167000-96172000	Weak transcription	Esophagus	oesophagus
43	chr8:96167000-96172000	Weak transcription	Gastric	stomach
44	chr8:96167000-96172600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:96167200-96170000	Weak transcription	Psoas Muscle	Psoas
46	chr8:96167200-96171200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:96167200-96171200	Weak transcription	Fetal Muscle Leg	muscle
48	chr8:96167200-96171400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr8:96167200-96171400	Weak transcription	A549	lung
50	chr8:96167200-96171400	Weak transcription	Hela-S3	cervix

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