Variant report

Variant	rs527900263
Chromosome Location	chr6:4894737-4894738
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4894595..4897390-chr6:4897999..4900907,2	MCF-7	breast:
2	chr6:4865807..4867722-chr6:4893778..4896538,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv3372254	chr6:4894378-4896926	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3352747	chr6:4894628-4896776	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4872200-4898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:4878200-4905200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:4879600-4906200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:4880400-4907800	Weak transcription	Small Intestine	intestine
5	chr6:4880600-4898600	Weak transcription	HSMM	muscle
6	chr6:4882800-4909000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:4884000-4898400	Weak transcription	Psoas Muscle	Psoas
8	chr6:4884800-4903800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:4885000-4908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:4887200-4901400	Weak transcription	HSMMtube	muscle
11	chr6:4888000-4906400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:4889200-4906400	Weak transcription	NHLF	lung
13	chr6:4889400-4895800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:4889400-4898400	Weak transcription	Fetal Lung	lung
15	chr6:4889600-4898400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:4890200-4898800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:4890200-4901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:4890400-4897800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:4890600-4913800	Weak transcription	Hela-S3	cervix
20	chr6:4890800-4900600	Weak transcription	NH-A	brain
21	chr6:4891200-4894800	Strong transcription	Primary T cells from cord blood	blood
22	chr6:4891200-4896200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:4891200-4899000	Weak transcription	Brain Germinal Matrix	brain
24	chr6:4891200-4905600	Weak transcription	Fetal Kidney	kidney
25	chr6:4891200-4907400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:4891400-4895200	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr6:4891400-4895200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:4891400-4899200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:4891400-4900400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:4891400-4906400	Weak transcription	Fetal Heart	heart
31	chr6:4891600-4899000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:4891600-4899000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr6:4891800-4894800	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:4891800-4898000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:4892000-4894800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:4892000-4894800	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:4892000-4894800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:4892000-4894800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:4892000-4894800	Strong transcription	Liver	Liver
40	chr6:4892000-4895000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:4892000-4895000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:4892000-4895000	Strong transcription	GM12878-XiMat	blood
43	chr6:4892000-4895200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:4892000-4895200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:4892000-4895200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:4892000-4895400	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:4892000-4895600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:4892000-4896000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:4892000-4896800	Strong transcription	NHEK	skin
50	chr6:4892000-4897000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links