Variant report

Variant	rs527939203
Chromosome Location	chr13:96331201-96331202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr13:96328102-96331205	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr13:96331069-96332293	GM12878	blood:	n/a	n/a
3	ZNF384	chr13:96331197-96331677	GM12878	blood:	n/a	n/a
4	MAX	chr13:96331147-96331344	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96327839..96330034-chr13:96330873..96332549,2	MCF-7	breast:

Variant related genes	Relation type
DNAJC3-AS1	TF binding region
ENSG00000247400	Chromatin interaction
ENSG00000102580	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96325600-96332400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:96327000-96331800	Active TSS	GM12878-XiMat	blood
3	chr13:96327600-96331400	Active TSS	Right Ventricle	heart
4	chr13:96328000-96332000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr13:96328200-96331400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:96328200-96331400	Active TSS	Aorta	Aorta
7	chr13:96328200-96331400	Active TSS	Left Ventricle	heart
8	chr13:96328200-96331400	Active TSS	Pancreas	Pancrea
9	chr13:96328600-96331600	Active TSS	Rectal Smooth Muscle	rectum
10	chr13:96329600-96332400	Active TSS	Right Atrium	heart
11	chr13:96329800-96331400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:96330000-96331400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr13:96330000-96331400	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr13:96330000-96331400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:96330000-96331600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr13:96330000-96331800	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr13:96330200-96332000	Flanking Active TSS	Dnd41	blood
18	chr13:96330200-96333200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr13:96330200-96340800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:96330400-96331400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:96330400-96331400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr13:96330400-96331400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:96330400-96331400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr13:96330400-96331400	Flanking Active TSS	HUVEC	blood vessel
25	chr13:96330400-96332200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:96330600-96331400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:96330600-96331400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr13:96330600-96331400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr13:96330600-96331400	Enhancers	Fetal Brain Male	brain
30	chr13:96330600-96331400	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr13:96330600-96331600	Enhancers	Primary T cells fromperipheralblood	blood
32	chr13:96330600-96331800	Enhancers	Primary B cells from peripheral blood	blood
33	chr13:96330600-96331800	Enhancers	Small Intestine	intestine
34	chr13:96330600-96331800	Active TSS	Thymus	Thymus
35	chr13:96330600-96332000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr13:96330600-96332000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr13:96330600-96332400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr13:96330600-96336400	Weak transcription	Gastric	stomach
39	chr13:96330600-96336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr13:96330600-96340800	Weak transcription	Spleen	Spleen
41	chr13:96330800-96331400	Enhancers	H9 Cell Line	embryonic stem cell
42	chr13:96330800-96331400	Flanking Active TSS	HepG2	liver
43	chr13:96330800-96331400	Flanking Active TSS	Osteobl	bone
44	chr13:96330800-96331800	Enhancers	Adipose Nuclei	Adipose
45	chr13:96330800-96331800	Enhancers	Fetal Thymus	thymus
46	chr13:96330800-96331800	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr13:96330800-96332000	Enhancers	Brain Anterior Caudate	brain
48	chr13:96330800-96332400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr13:96330800-96332400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr13:96330800-96333600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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