Variant report

Variant	rs527942641
Chromosome Location	chr2:56083708-56083709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56081136..56083085-chr2:56083117..56085242,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2510458	chr2:56082815-56084409	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3503313	chr2:56082848-56084846	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv5753	chr2:56083327-56084062	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2296549	chr2:56083347-56084047	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3457768	chr2:56083420-56083942	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3503306	chr2:56083425-56083941	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3503310	chr2:56083439-56083961	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3503309	chr2:56083454-56083900	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3503311	chr2:56083458-56083880	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3457767	chr2:56083467-56083915	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3457769	chr2:56083471-56083913	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3503312	chr2:56083472-56083897	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3738	chr2:56083473-56083978	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3457766	chr2:56083480-56083871	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3503307	chr2:56083489-56083893	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3341871	chr2:56083492-56083867	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3457765	chr2:56083511-56083851	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3503305	chr2:56083526-56083844	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3457770	chr2:56083527-56083860	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3503314	chr2:56083527-56083860	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56071400-56084000	Weak transcription	HSMM	muscle
2	chr2:56071600-56086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:56071800-56084000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:56079000-56088600	Weak transcription	Fetal Lung	lung
5	chr2:56082400-56085400	Enhancers	HMEC	breast
6	chr2:56082600-56083800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:56082600-56083800	Enhancers	Placenta	Placenta
8	chr2:56082600-56084000	Enhancers	A549	lung
9	chr2:56082600-56085200	Enhancers	Hela-S3	cervix
10	chr2:56082600-56085400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:56082600-56086000	Enhancers	NHEK	skin
12	chr2:56082600-56086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:56082800-56085600	Enhancers	Osteobl	bone
14	chr2:56083000-56084600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:56083200-56084200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:56083200-56088600	Weak transcription	Ovary	ovary
17	chr2:56083400-56088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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