Variant report

Variant	rs527959898
Chromosome Location	chr2:141441501-141441502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:141441479-141441529	Hepatocyte	liver:	n/a
2	chr2:141441479-141441529	HCM	heart:	n/a
3	chr2:141441479-141441529	HEEpiC	esophagus:	n/a
4	chr2:141441479-141441529	HAEpiC	amniotic membrane:	n/a
5	chr2:141441479-141441529	HCT-116	colon:	n/a
6	chr2:141441479-141441529	HEK293	kidney:	embryo
7	chr2:141441479-141441529	NB4	blood:	n/a
8	chr2:141441479-141441529	HCF	heart:	n/a
9	chr2:141441479-141441529	U87	brain:	n/a
10	chr2:141441479-141441529	SAEC	small airway:	n/a
11	chr2:141441479-141441529	K562	blood:	n/a
12	chr2:141441479-141441529	AG04450	lung:	fetal
13	chr2:141441479-141441529	HMEC	breast:	n/a
14	chr2:141441479-141441529	RPTEC	kidney:	n/a
15	chr2:141441479-141441529	SK-N-SH	brain:	n/a
16	chr2:141441479-141441529	HRE	kidney:	n/a
17	chr2:141441479-141441529	GM12891	blood:	n/a
18	chr2:141441479-141441529	AoSMC	blood vessel:	n/a
19	chr2:141441479-141441529	H1-hESC	embryonic stem cell:	embryo
20	chr2:141441479-141441529	MCF10A-Er-Src	breast:	n/a
21	chr2:141441479-141441529	MCF-7	breast:	n/a
22	chr2:141441479-141441529	GM19239	blood:	n/a
23	chr2:141441479-141441529	ovcar-3	ovarian:	n/a
24	chr2:141441479-141441529	AG04449	skin:	fetal
25	chr2:141441479-141441529	AG10803	skin:	n/a
26	chr2:141441479-141441529	HNPCEpiC	eye:	n/a
27	chr2:141441479-141441529	NH-A	brain:	n/a
28	chr2:141441479-141441529	HepG2	liver:	n/a
29	chr2:141441479-141441529	A549	lung:	n/a
30	chr2:141441479-141441529	PrEC	prostate:	n/a
31	chr2:141441479-141441529	HPAEpiC	pulmonary alveolar:	n/a
32	chr2:141441479-141441529	T-47D	breast:	n/a
33	chr2:141441479-141441529	SK-N-MC	brain:	n/a
34	chr2:141441479-141441529	GM12892	blood:	n/a
35	chr2:141441479-141441529	Hela-S3	cervix:	n/a
36	chr2:141441479-141441529	CMK	blood:	n/a
37	chr2:141441479-141441529	NHDF-neo	bronchial:	n/a
38	chr2:141441479-141441529	HRCEpiC	kidney:	n/a
39	chr2:141441479-141441529	HRPEpiC	eye:	n/a
40	chr2:141441479-141441529	NHBE	bronchial:	n/a
41	chr2:141441479-141441529	HCPEpiC	choroid plexus:	n/a
42	chr2:141441479-141441529	GM12878	blood:	n/a
43	chr2:141441479-141441529	LNCaP	prostate:	n/a
44	chr2:141441479-141441529	Jurkat	blood:	n/a
45	chr2:141441479-141441529	IMR90	lung:	fetal
46	chr2:141441479-141441529	GM06990	blood:	n/a
47	chr2:141441479-141441529	ECC-1	luminal epithelium:	n/a
48	chr2:141441479-141441529	SKMC	muscle:	n/a
49	chr2:141441479-141441529	AG09319	gingival:	n/a
50	chr2:141441479-141441529	AG09309	skin:	n/a

No data

Variant related genes	Relation type
ENSG00000236440	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv583194	chr2:141409166-141471725	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875196	chr2:141409166-141471725	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875197	chr2:141409166-141478468	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv583195	chr2:141415043-141466384	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv583196	chr2:141426714-141487897	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv459540	chr2:141428751-141487897	Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv459552	chr2:141428751-141487897	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv583197	chr2:141428751-141487897	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links