Variant report

Variant	rs527989798
Chromosome Location	chr4:99064130-99064131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99063959..99066263-chr4:99181971..99183968,2	K562	blood:
2	chr4:99062262..99068404-chr4:99178848..99183768,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214559	Chromatin interaction
ENSG00000138698	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1002098	chr4:98501337-99086320	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537193	chr4:98501337-99086320	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv879648	chr4:98547717-99104879	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1000011	chr4:98562308-99101692	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv528390	chr4:98873667-99065480	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv879650	chr4:99057457-99172232	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv998270	chr4:99063275-99120404	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99063400-99064800	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:99063400-99065200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr4:99063400-99065600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr4:99063600-99064200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:99063600-99064200	Flanking Active TSS	Liver	Liver
6	chr4:99063600-99064800	Active TSS	GM12878-XiMat	blood
7	chr4:99063600-99064800	Active TSS	HMEC	breast
8	chr4:99063600-99065200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr4:99063600-99065200	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr4:99063600-99065200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:99063600-99065200	Active TSS	Brain Germinal Matrix	brain
12	chr4:99063800-99064200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:99063800-99064200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:99063800-99064200	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr4:99063800-99064200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr4:99063800-99064200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:99063800-99064200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr4:99063800-99064200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr4:99063800-99064200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:99063800-99064200	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr4:99063800-99064200	Flanking Active TSS	Brain Angular Gyrus	brain
22	chr4:99063800-99064200	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr4:99063800-99064200	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr4:99063800-99064200	Flanking Active TSS	Colon Smooth Muscle	Colon
25	chr4:99063800-99064200	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr4:99063800-99064200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr4:99063800-99064200	Flanking Active TSS	Fetal Brain Female	brain
28	chr4:99063800-99064200	Flanking Active TSS	Fetal Heart	heart
29	chr4:99063800-99064200	Flanking Active TSS	Fetal Lung	lung
30	chr4:99063800-99064200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr4:99063800-99064200	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr4:99063800-99064200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr4:99063800-99064200	Flanking Active TSS	Hela-S3	cervix
34	chr4:99063800-99064200	Flanking Active TSS	HUVEC	blood vessel
35	chr4:99063800-99064200	Flanking Active TSS	NHDF-Ad	bronchial
36	chr4:99063800-99064400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr4:99063800-99064400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr4:99063800-99064400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr4:99063800-99064400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:99063800-99064400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr4:99063800-99064400	Flanking Active TSS	Fetal Thymus	thymus
42	chr4:99063800-99064400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr4:99063800-99064400	Flanking Active TSS	NH-A	brain
44	chr4:99063800-99064600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:99063800-99064800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:99063800-99064800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:99063800-99064800	Active TSS	Thymus	Thymus
48	chr4:99063800-99065000	Active TSS	H1 Cell Line	embryonic stem cell
49	chr4:99063800-99065000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:99063800-99065000	Active TSS	H9 Cell Line	embryonic stem cell

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