Variant report

Variant	rs528123842
Chromosome Location	chr11:121348833-121348834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:121322245..121324766-chr11:121347712..121349803,2	MCF-7	breast:
2	chr11:121330064..121332974-chr11:121346405..121349549,4	MCF-7	breast:
3	chr11:121322388..121323229-chr11:121348116..121348867,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246790	Chromatin interaction
ENSG00000137642	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3401284	chr11:121347342-121351640	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121337400-121349400	Weak transcription	Ovary	ovary
2	chr11:121337400-121350600	Weak transcription	Left Ventricle	heart
3	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
4	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
5	chr11:121338200-121349000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:121339000-121349200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
8	chr11:121339200-121349000	Weak transcription	Lung	lung
9	chr11:121339200-121349000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:121339800-121351000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:121339800-121351000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:121340000-121349000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:121340400-121349400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:121340800-121349000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:121340800-121351400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:121341000-121349600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:121341200-121349000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr11:121342200-121349000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:121342400-121353000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:121342600-121349000	Weak transcription	Primary B cells from cord blood	blood
21	chr11:121342600-121349600	Weak transcription	Fetal Stomach	stomach
22	chr11:121343800-121349000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:121343800-121349200	Weak transcription	Fetal Brain Male	brain
24	chr11:121344200-121349000	Weak transcription	Brain Angular Gyrus	brain
25	chr11:121344200-121349000	Weak transcription	Fetal Brain Female	brain
26	chr11:121344200-121358200	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:121344400-121349000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:121344600-121350800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr11:121344800-121349200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:121345000-121349000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:121345000-121350400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr11:121346200-121350600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:121346200-121350600	Enhancers	Stomach Mucosa	stomach
34	chr11:121346400-121350200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:121346600-121350200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
36	chr11:121346800-121349200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr11:121346800-121349600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:121347000-121349400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr11:121347000-121350000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:121347200-121349000	Weak transcription	Liver	Liver
41	chr11:121347200-121349000	Strong transcription	GM12878-XiMat	blood
42	chr11:121347200-121350600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr11:121347400-121349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:121347400-121349000	Weak transcription	Gastric	stomach
45	chr11:121347400-121349000	Weak transcription	HMEC	breast
46	chr11:121347400-121349200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:121347400-121352800	Weak transcription	NHEK	skin
48	chr11:121347600-121349000	Strong transcription	Primary T cells from cord blood	blood
49	chr11:121347600-121349800	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:121347800-121349000	Enhancers	H9 Cell Line	embryonic stem cell

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