Variant report

Variant	rs528155848
Chromosome Location	chr2:231408567-231408568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875948	chr2:231380697-231420401	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv584673	chr2:231385231-231433237	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv875949	chr2:231407663-231434272	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231371000-231409800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:231390800-231409200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:231401000-231430200	Weak transcription	Pancreas	Pancrea
4	chr2:231401400-231408600	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:231401800-231409200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:231403200-231410200	Strong transcription	Primary B cells from cord blood	blood
7	chr2:231403600-231408600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:231403800-231408800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr2:231403800-231409600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr2:231404000-231409000	Strong transcription	Primary T cells from cord blood	blood
11	chr2:231404000-231409000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr2:231404000-231417200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:231404200-231409000	Strong transcription	Adipose Nuclei	Adipose
14	chr2:231404200-231409200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr2:231404200-231409400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:231404200-231409600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr2:231404200-231410200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr2:231404400-231409800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr2:231404400-231410000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:231404600-231409000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr2:231404600-231416400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:231404800-231408800	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr2:231404800-231410800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:231405000-231409800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:231405200-231408800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:231405400-231409800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:231405400-231411600	Weak transcription	Placenta	Placenta
28	chr2:231405400-231411800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:231405600-231408600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:231405600-231408800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr2:231405600-231409000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:231405600-231409000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr2:231405600-231410200	Strong transcription	Primary hematopoietic stem cells	blood
34	chr2:231405800-231415000	Weak transcription	Gastric	stomach
35	chr2:231406000-231408600	Strong transcription	Liver	Liver
36	chr2:231406400-231409400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:231406400-231410200	Weak transcription	Thymus	Thymus
38	chr2:231406600-231408800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr2:231406800-231408800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:231406800-231408800	Weak transcription	Lung	lung
41	chr2:231406800-231409000	Weak transcription	Fetal Muscle Leg	muscle
42	chr2:231406800-231410200	Weak transcription	Fetal Thymus	thymus
43	chr2:231406800-231411200	Weak transcription	Aorta	Aorta
44	chr2:231407000-231408600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr2:231407000-231409600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr2:231407000-231409600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:231407000-231410000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr2:231407000-231417200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr2:231407200-231408600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr2:231407200-231408800	Weak transcription	NHEK	skin

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