Variant report

Variant	rs528158094
Chromosome Location	chr11:8958606-8958607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr11:8958581-8959039	GM12891	blood:	n/a	chr11:8958846-8958855 chr11:8958845-8958864 chr11:8958846-8958864
2	POU2F2	chr11:8958586-8959071	GM12878	blood:	n/a	n/a
3	ELF1	chr11:8958589-8959065	GM12878	blood:	n/a	n/a
4	PAX5	chr11:8958504-8959180	GM12878	blood:	n/a	chr11:8958846-8958855 chr11:8958845-8958864 chr11:8958846-8958864
5	POU2F2	chr11:8958606-8958969	GM12878	blood:	n/a	n/a
6	ATF2	chr11:8958557-8959209	GM12878	blood:	n/a	n/a
7	PAX5	chr11:8958568-8959068	GM12878	blood:	n/a	chr11:8958846-8958855 chr11:8958845-8958864 chr11:8958846-8958864
8	FOXM1	chr11:8958472-8959152	GM12878	blood:	n/a	n/a
9	NFIC	chr11:8958546-8959204	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:8955859..8958646-chr11:8984465..8986441,3	MCF-7	breast:
2	chr11:8957976..8959649-chr11:8961738..8963442,2	K562	blood:
3	chr11:8955484..8958608-chr11:8984431..8986354,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKIP1-6	chr11:8958467-8958768	NONHSAT017892

Variant related genes	Relation type
C11orf16	TF binding region
ENSG00000175348	Chromatin interaction
ENSG00000254860	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv8787	chr11:8954949-8959098	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv430318	chr11:8958492-8964319	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8942400-8959000	Weak transcription	Fetal Kidney	kidney
2	chr11:8943800-8969200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:8944600-8985000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:8945800-8974000	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:8947000-8968800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:8947000-8977000	Weak transcription	Aorta	Aorta
7	chr11:8947400-8969000	Weak transcription	Thymus	Thymus
8	chr11:8947600-8969000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:8948200-8969000	Weak transcription	Fetal Brain Female	brain
10	chr11:8948600-8969200	Weak transcription	Gastric	stomach
11	chr11:8948600-8969200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:8951200-8974400	Weak transcription	HepG2	liver
13	chr11:8952600-8975800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:8952800-8968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:8954400-8984400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:8955200-8976200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:8955800-8968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:8956800-8968600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:8956800-8969000	Weak transcription	Osteobl	bone
20	chr11:8957000-8962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:8957000-8968000	Weak transcription	HSMM	muscle
22	chr11:8957000-8968800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:8957000-8968800	Weak transcription	Fetal Intestine Large	intestine
24	chr11:8957000-8969000	Weak transcription	HSMMtube	muscle
25	chr11:8957000-8969800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:8957000-8969800	Weak transcription	Fetal Stomach	stomach
27	chr11:8957000-8974200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:8957000-8980800	Weak transcription	Fetal Heart	heart
29	chr11:8957200-8958800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:8957200-8968800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:8957200-8968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:8957200-8969000	Weak transcription	A549	lung
33	chr11:8957200-8969200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:8957200-8970200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:8957200-8973400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:8957400-8959200	Weak transcription	K562	blood
37	chr11:8957400-8960400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:8957400-8968600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:8957400-8968800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:8957400-8969000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:8957400-8969000	Weak transcription	Fetal Thymus	thymus
42	chr11:8957400-8969000	Weak transcription	NH-A	brain
43	chr11:8957400-8969800	Weak transcription	Spleen	Spleen
44	chr11:8958400-8959600	Enhancers	GM12878-XiMat	blood
45	chr11:8958600-8959000	Enhancers	Placenta	Placenta

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